KEGG   Malus domestica (apple): 103405820
Entry
103405820         CDS       T03194                                 
Name
(RefSeq) DNA repair protein RAD4
  KO
K10838  xeroderma pigmentosum group C-complementing protein
Organism
mdm  Malus domestica (apple)
Pathway
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    103405820
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103405820
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     XPC-HR23B-CETN2 complex
      103405820
SSDB
Motif
Pfam: BHD_3 Rad4 BHD_1 BHD_2 Transglut_core
Other DBs
NCBI-GeneID: 103405820
NCBI-ProteinID: XP_008343052
LinkDB
Position
17:join(32050146..32050191,32051159..32051271,32051360..32051659,32051757..32051849,32051978..32052070,32052164..32052262,32052489..32052538,32052959..32053699,32054940..32055183,32055276..32055470,32055593..32055745,32055975..32056184,32056404..32056796)
AA seq 909 aa
MRSENKTNRSKQSSSGTLADISHEAVSKLLGRANKTGKRKSNNSLRPCDSIGKPESEPKS
DKDVDSRVRGNILESEGCSKDANRKVSAEEKVDGEGFGCTSTNIREELDDSDWEEGSIPI
SNSAGDHEVTIELNETPDSTRKKRIRRASAEDKELAELVHRVHLLCLLARGRLIDRACDD
ALIQAALLSLLPLHVLNTSKVANLTTKDFSPLVVWFQSNFHVRSTSVSRPFSSGLKFALE
THEGTQEEIAALSVALFRALNLTTRFVSVLDVASLKPEAGKTEYSSEDVSRSSRRIFSSS
TPMVARQKVSVSPAKSLSCSTSGNVYGTSRACSSESKDPTRNNTLPTSSGIAYVTNDKLS
DTSATQYDISQAFVNEKSLGSKRKGDHEFEMQLQMALSATAVPTADREMGSGQKDLSGNF
ANFPDLKRMKRIVCEESQNPSQSISTAVGSRKEGSPLYWAEVYCQGKWVHIDAINGIIDG
EQKVEAIAAACKTSLRYAVAFAGNGAKDVTRRYCLKWYQIASQRVNSIWWDAVLAPLRNL
EVRATCGIVKLEKEWNGAAMDYHPTMIDVSRNSLEDMELETRALTEPLPTNQQAYKNHQL
YAIEKWLTRDQVLHPKGPVLGFCSGHPVYPRTCVQTLKTRERWLREGLQVKTNEHPVKEL
KRSPKVQKAQVPESDDFVGGNSKRTLELYGKWQLEPLHLAHAVNGIVPKNDYGNVEVWSE
KCLPPGTVHLRLPRLFYVAKRLEIDYAPAMVGFEYKNGQSFPVFDGIVVCSEFKDAILEA
YAEEEERRDAAEKKRNQGQAISRWYQLLCSIVTRQRLNNRYGDSPSSTASVDTNKVNSNI
DVQVDDRQNDKQSLACQQNVPEKRTADPSASMPEDHEHVFLTENQSFDEGNLVLTKRCQC
GFSVQVEQL
NT seq 2730 nt   +upstreamnt  +downstreamnt
atgcgaagcgaaaacaagacgaaccgttccaaacaatcgtcatcaggaactcttgccgac
atatcacatgaggctgtcagcaaacttctggggcgtgccaataaaactgggaaaaggaaa
tctaacaatagtctgcgtccatgtgattcaatcggaaagcctgagagcgagccaaaaagt
gacaaagatgtcgattcaagagtcagagggaatattttggaatctgagggttgtagtaaa
gatgcaaatcgaaaggtctctgcagaagagaaagttgatggggaaggctttggatgcact
tccacaaacattagggaagaactggatgactcagattgggaagagggttcaatacccatt
tctaattccgctggcgatcatgaagtgactattgaattaaatgagacaccagattctaca
agaaagaaacgtatccgtcgggcttctgctgaagataaggaactggctgagcttgttcat
agggttcatttactttgtttacttgcacggggaaggttgattgatagagcttgtgatgat
gctcttattcaggccgctttactttctctgcttccactacacgtgctgaatacatccaag
gttgcaaaccttactacaaaggattttagtcctctagtcgtctggtttcaaagtaacttc
catgttcgaagtacaagtgtgagcaggccattttcttcgggtctgaaatttgcccttgaa
actcatgaaggaactcaagaagagattgctgctttgtctgtggcactctttagagcatta
aatctgacaacgcggttcgtctcggttttggatgttgcctctttaaaaccagaagctggc
aagaccgaatattctagtgaagatgtaagcagatcgagtaggagaatattcagttcttcg
accccaatggtggctagacaaaaggtctctgtctctcctgccaaatcactttcatgtagt
acgagtggcaatgtctatggaacttctcgggcgtgttcaagcgaaagtaaggaccccaca
agaaacaatactctgcccacaagctctggtatcgcttatgtgacgaatgataaattgtca
gatacttctgcaacacaatatgacatctctcaagcattcgttaatgagaaatctctggga
tcaaaaaggaaaggggatcatgagttcgaaatgcagttgcaaatggctctttctgccaca
gcagtgccgactgcagatagagaaatgggttcaggtcagaaagacttgagtggaaatttt
gcaaatttccctgacctgaaaagaatgaaaagaattgtttgtgaagaatcacaaaacccc
tcccagagtatctctactgcagttggctcgagaaaagaaggatctcctttgtactgggca
gaagtatactgtcaggggaagtgggtgcatatagatgctatcaatggaattattgatgga
gagcagaaggttgaagccatagctgctgcatgcaaaacgtctttgagatatgcagttgct
tttgctgggaatggggcgaaagatgtgactcgcaggtactgtctgaagtggtatcagata
gcatcccaacgagtcaattcaatatggtgggatgcagtactggcacccttgagaaattta
gaggtgagagcaacatgtggcatagttaagttggagaaagaatggaatggtgcggccatg
gattatcatccaactatgattgatgtttcccgaaattctctagaggatatggagttggaa
actagggccttaactgagcctcttccaactaatcagcaggcctataaaaaccatcaacta
tatgctatagaaaaatggcttacaagggatcaggtacttcatccgaagggccctgttttg
ggtttttgttctggtcatccagtttaccctaggacatgtgtgcaaacactaaagacaaga
gaaagatggctgcgggaggggctacaagttaaaaccaatgagcatcctgtgaaggagttg
aaacgttctccaaaagtccaaaaagcacaggtacctgaatctgatgattttgttgggggt
aattcgaaacgaactcttgaactttatgggaagtggcaacttgaaccattgcatctggct
catgctgttaatgggatagtgccaaagaatgattacggtaatgtggaagtatggtctgag
aagtgccttccgccagggactgtgcatttgaggttgccgaggctgttttatgttgccaag
agactggaaattgattatgctcccgccatggttggtttcgaatataaaaatggtcaatcg
tttcctgtctttgatggtatagtagtctgctctgagttcaaggatgcaatattggaggca
tatgcagaggaagaggaaagaagagacgctgcagaaaagaaaagaaaccaagggcaggct
atttctcggtggtatcagcttctctgttcgattgtaactcgacaaaggttaaacaaccgc
tatggggactccccctcttctacagcatcagttgacaccaacaaggtgaatagcaacata
gacgtacaggttgatgatcgtcagaatgataagcaatctcttgcatgccagcaaaatgtg
cctgaaaagaggacagctgatccatcagcttccatgcccgaagatcacgagcatgtattc
ttgaccgaaaaccagagttttgatgagggaaacttggtgctgacaaagaggtgtcaatgt
ggattctcagtgcaagttgaacaactgtag

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