Malus domestica (apple): 103405931
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Entry
103405931 CDS
T03194
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103405931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103405931
03009 Ribosome biogenesis [BR:
mdm03009
]
103405931
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103405931
Spliceosome [BR:
mdm03041
]
Complex A
U2 snRNP components
U2 related factors
103405931
Complex B
103405931
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
103405931
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
90S particles
Helicases
103405931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
Helicase_C
AAA_22
AAA_19
SRP54
ResIII
AAA_7
T2SSE
nSTAND3
AAA_30
ABC_tran
AAA_33
TniB
AAA_16
AAA_29
Motif
Other DBs
NCBI-GeneID:
103405931
NCBI-ProteinID:
XP_008343182
UniProt:
A0A498HHD5
LinkDB
All DBs
Position
17:33921563..33925988
Genome browser
AA seq
730 aa
AA seq
DB search
MGTERKRKVSLFDVVDEASITSAKMNKSNGSGGAAANQNAVNSLINRWTGKPYSQRYYEI
LEKRKTLPVWHQKEEFLQAFKASQSLILVGETGSGKTTQIPQFVLEAVHSESSDKRKKMM
VACTQPRRVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSARTVLKYLTDGMLLREAMT
DPLLERYSVVILDEAHERTLATDVLFGLLKEVLRNRPDLKVVVMSATLEAEKFQGYFSGA
PLMKVPGRLHPVEIFYTEEPERDYLEAAIRTVVQIHMYETPGDILVFLTGEEEIEDACRK
INKEVGNLGDQVGPVKVVPLYSTLPPAMQQKIFDPAPPPIKEGGIPGRKIVVSTNIAETS
LTIDGIVYVIDPGFAKQKVYNPRVRVESLLVSPISKASAHQRSGRAGRTQPGKCFRLYTE
KSFNNDLQPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLG
ALDDEGNLTKLGEIMSEFPLDPQMSKMLVVSPEFNCSNEILSVSAMLSVPNCFVRPREAQ
KAADEAKARFGHIDGDHLTLLNVYHAYKQNNEDPSWCYENFVNQRALKSADNVRQQLVRI
MARFNLKLCSTEFNSRDYYINIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCL
DHKPEWVIYNEYVLTSRNFIRTVTDVRGEWLVDIAPHYYDLANFPQCEAKRVLEKLYRKR
EDKDENKNRK
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
atgggtacggagaggaagaggaaggtcagcttgttcgacgtggtggacgaggcttccatc
acatcggcgaagatgaacaaatcgaacggcagcggaggagctgctgccaaccaaaacgct
gtgaacagtcttatcaatcggtggaccgggaagccgtactctcagaggtactatgagatc
cttgaaaagaggaagacgttgcctgtttggcaccagaaagaggagttcttgcaagctttc
aaggccagccagtctctcattttggttggtgaaacgggtagcggtaaaaccactcagatt
cctcaatttgttttggaagctgtccattcagaatcttccgataaacgcaagaagatgatg
gttgcgtgtacccaaccacgtagggtggctgcaatgtcagtatcccgtcgtgttgctgaa
gagatggatgtaaccattggagaagaagttggttatagcatccgttttgaagactgcagc
agtgccagaactgtgttgaagtatctcaccgatggaatgcttttaagagaagcaatgact
gatccacttctagaaagatacagcgtggtaattcttgatgaagctcacgaaagaacttta
gccacagatgttctatttgggcttttgaaggaagtgttgagaaacagacctgatttgaag
gtggttgtgatgagtgctacacttgaagctgaaaagtttcagggttatttcagtggtgcg
ccactcatgaaagttcctggaaggcttcatccggtggaaattttttacactgaggaacct
gaaagggattatctggaagcagcaattcgaacagttgtgcagattcatatgtatgagacc
ccaggagatatacttgtttttctaacaggagaggaggagatagaagatgcatgccgcaaa
ataaacaaggaagtcggaaatctgggtgaccaggttggtcctgtgaaagtggtgcctctg
tattcaactctacctccagctatgcagcagaaaatatttgatcctgctcctcctcccata
aaagaaggtggaattcctggaaggaagatcgtggtgtcaacaaatattgcagaaacttct
ctgactattgatggaattgtttatgttattgatcccggatttgctaaacaaaaagtctat
aacccaagagtgcgtgttgaatccttgttggtatctccaatttccaaggcaagtgcacat
cagaggtcaggtcgtgctggaagaactcagccaggaaaatgtttcagactttatactgag
aaaagtttcaataatgatcttcaaccgcaaacgtatccagaaattttgagatcaaacctt
gcaaatacagttcttactttgaagaaactaggaatagatgatctggttcattttgatttt
atggatccccctgctcctgagacattgatgagagcactagaggtcttgaattatttggga
gcattggatgatgaaggtaacttgaccaagctaggggagattatgagtgagttcccgttg
gatcctcagatgtcaaagatgctcgtagtcagccctgagttcaactgctcaaatgaaatt
ttgtcagtatctgccatgctctcagtacccaattgctttgtccggcctagggaggctcaa
aaagctgctgacgaagcaaaagctaggttcgggcacattgatggagatcatctcacactt
ctgaatgtgtatcatgcatacaagcaaaataatgaggatccgtcatggtgctatgagaac
tttgtgaatcagagggcattgaagtctgcagacaacgtcaggcagcagctagtgcgcatt
atggcccggtttaacctcaagctatgcagtactgaattcaatagtcgtgactactacatc
aacataaggaaggccatgctagctggatatttcatgcaggtggctcatctggaacgtact
ggacactatctgacagtgaaagataaccaagtggtgcatttgcatccgtcgaattgcttg
gaccacaagccagaatgggtgatctacaacgagtatgttttgacaagcaggaattttatc
cgtacagtgacggatgttcgtggggagtggctggtcgatatagcaccccactactatgac
ttggcgaattttccccagtgtgaggccaagcgtgttcttgagaagctatacaggaagcgg
gaggacaaggatgagaacaaaaaccgaaaatga
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