Malus domestica (apple): 103406254
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Entry
103406254 CDS
T03194
Name
(RefSeq) probable pectate lyase 18 isoform X1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103406254
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103406254
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103406254
NCBI-ProteinID:
XP_028955992
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Position
01:join(21400680..21400813,21401140..21402040,21402809..21403014,21405740..21405995)
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AA seq
498 aa
AA seq
DB search
MLLPTTCILLICFFLSPLCKASYSFNLSLPHQHPDPDAVAHEVQRRVNASVSRRQMLSID
VKDQSQCLVGNPIDDCWRCEDWSNNRQKLADCGIGFGMDAMGGKGGLIYIVTDSSDSNPA
DPTPGTLRHAVIQTEPLWIIFSADMTIKLKCELIVNSFKTIDGRGYSVHVTGGGCITLQY
VSNIIIHNIHVHHCKPAGNTNVASSPTHVGWRGESDGDGISLFSAHKIWIDHCSLSFCAD
GLIDAIMGSTGITISNNYFAHHDEVMLLGHNDKYLPDSGMQVTIAFNHFGVALVQRMPRC
RRGYIHVVNNDFTRWEMYAIGGSANPTINSQGNRYTAPQDTNAKEVTKRVDTNEGDWSDW
NWRTEGDIMVNGAFFVPSGAGMSAQYAKASSIEPKSVTLIEQITANAGVFGDPREESSRV
TSPDDGPITDGGSTGSGSGGSNGHGNGNGDDYFGLIFGNGARPSPNTIFLSISIIFILYF
TTNHGGALLSLPLLLTLL
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgcttcttcctaccacctgcattctcttaatttgtttctttctctctcctctctgtaaa
gcttcttactccttcaacctctccctccctcaccagcacccagaccctgatgcagttgct
catgaagttcaaaggagagtcaatgcgtctgtttccaggcgccaaatgctgtccattgac
gtcaaggaccaaagccagtgccttgtcggcaacccaatcgacgattgctggcgctgcgag
gactggagcaacaaccgccaaaagctcgccgattgcggcatcgggttcggcatggacgcc
atgggaggtaaggggggcctgatctacatagtcaccgactcgtcggattccaacccggcc
gacccaactccgggcacgctccgccacgccgtcattcaaaccgagcccctctggatcatc
ttctctgctgacatgaccatcaagctcaaatgcgagcttatcgtcaacagcttcaagacc
atcgacggccgcggctacagcgttcacgtcaccggtggcggatgcataaccctccagtac
gtctccaacatcattatccacaacatccacgtccaccactgcaagcccgccggcaacacc
aacgtcgcctccagccccacccacgtcggctggcgcggcgagtcggacggcgacggcatc
tccctcttcagtgctcacaaaatctggatcgaccactgctccctctcgttctgcgctgac
ggattaatcgacgccatcatggggtcgaccggaatcacgatttccaacaactacttcgcc
caccatgacgaggtgatgctgttgggccacaacgacaagtacttgccggactccgggatg
caggtgacgatagcgtttaaccacttcggtgtggcgctggtgcagcgtatgccgcggtgc
agacgcgggtacatccacgtggtgaacaacgacttcacgcggtgggaaatgtatgctatc
ggcggtagcgctaaccccaccatcaacagccaggggaaccggtacactgctcctcaggac
acgaacgccaaggaggtgacaaagcgcgtggacacgaacgagggggattggtccgactgg
aactggaggacggagggggacataatggtaaatggcgcgtttttcgtaccgtcaggcgcg
ggaatgagcgctcagtacgccaaggcctcaagcatcgagcccaagtccgtgactctcatt
gaacaaatcacggccaacgccggtgtctttggtgacccaagggaggagagcagtcgcgta
acgagccccgacgacgggcccatcaccgacggcggcagcaccggcagtggcagcggagga
tccaacggccacggcaacggcaatggcgatgactattttggattgatatttgggaacggt
gctcgaccaagcccaaacacaatattcttgtctatttcaattatttttattttgtacttt
accaccaaccatggtggtgctctattatctttaccattattattaacattattatag
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