KEGG   Malus domestica (apple): 103406586
Entry
103406586         CDS       T03194                                 
Name
(RefSeq) exosome complex component RRP41 homolog
  KO
K11600  exosome complex component RRP41
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103406586
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103406586
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     103406586
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     103406586
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 103406586
NCBI-ProteinID: XP_008343793
LinkDB
Position
01:complement(join(31472592..31472639,31472806..31472895,31473027..31473112,31473199..31473315,31473801..31473837,31473920..31473998,31474136..31474203,31474313..31474351,31474495..31474555,31474641..31474687,31474785..31474838))
AA seq 241 aa
MEYVSPEGLRLDGRRPMEMRQIRGEIGVVDKADGSAVFEMGNTKVIAAVYGPREVPNRSQ
QMNDRALVRCEYTMANFSTGDRMRKPKGDRRSTEISLVIRQTMEACIMTHLMPRTQIDIF
VQVLQADGGTRSACINAATLALSDAGIPMRDLVTSCSAGYLNSTPLLDLNYVEDSAGGAD
VTLGIMPKLDKVTLLQMDAKLPLDIFENVMQLAIEGCKAVATYIRQVLLENTKQLEYRRG
T
NT seq 726 nt   +upstreamnt  +downstreamnt
atggagtacgtgagcccagaaggtcttcgcttagatggtcggcggcccatggaaatgaga
caaattcgaggagagattggtgttgtggacaaagctgacggttctgctgtgtttgagatg
gggaacaccaaagtcattgctgcagtgtatggccctcgagaggtcccaaataggagccaa
cagatgaatgacagggcactggtgcgatgtgagtacaccatggcaaattttagtactgga
gatcgcatgaggaaaccaaagggtgatagacgatccacagagatttctcttgttattcgg
caaaccatggaagcatgcattatgactcatttaatgcctcggactcagattgatattttt
gtgcaagttctccaagcagatggaggtactagatctgcatgtatcaatgctgcaaccctg
gccctttcagatgctggaattccaatgcgtgaccttgttacttcctgtagtgcgggctac
cttaatagcacacctctacttgatttaaactatgtagaagatagtgctggaggcgctgat
gtcactttaggcattatgccaaagttggacaaagtgactcttcttcagatggatgctaaa
ttaccgttggacatttttgaaaacgtaatgcaacttgcaatcgagggctgcaaggcagtt
gcaacatatattcgacaagtattactagagaatacaaagcaattggagtatcgccgaggc
acgtag

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