Malus domestica (apple): 103407022
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Entry
103407022 CDS
T03194
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103407022
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103407022
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
103407022
mRNA degradation factors
5'-3' decay
Decapping complex
103407022
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
103407022
NCBI-ProteinID:
XP_028958611
LinkDB
All DBs
Position
05:complement(join(34176118..34178246,34178782..34178845,34180460..34180510,34180749..34180882,34181562..34181649))
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AA seq
821 aa
AA seq
DB search
MEGFESRGSIQEAASSIPQDLNQLQLNSSGEVFDASQYAFFGKDSVEEVELGGLDEEEAP
VGFDEEEFLYNRQEVDISLSDIDDLSLTFEKLNKDVSGTRSAGVIGDRGSRESSSAAEWA
QEHFPNWIDEEILDAESTQDGKRWSSHPYSSARPADSMPLYRTSSYPEPQQQQLQQQQHQ
HFSSEPILVPKSAFTSYPPPGGRPQQASPNRQASHLNPYLSGGPQGGLSSPNLSPYSSSQ
LQLNGLPHVSHFGGNLPQLNPGLSNSRPQKQWANQSGVYGDHPGLMNNLLQQQLAHQNGL
VPPQLMHQQQSQPQDPRLHHPVQPSFANLSVMQSQLFNPHLSASPPLVSKFEAMLGMGDL
GDQRPKSAQKVRPNMRFSQYGFDTGSHRREGGWPQFRSKYMTADEIENILRMQLAATHSN
DPYVDDYYHQFCLSRKSAGAKLKHHFCPTQLRDLPPRARANTEPHAFLQVDALGRVPFSS
IRRPRPLLEVEPPNSSSPGNTEQKVFEKPLEQEPMLAARVAIEDGLCLLLDVDDIDRFLQ
FNQLQDGGTQVRRRRQALLEGLAGSLQLVDPLGNNGPTVGLHKDDLVFLRLVSLPKGRKL
LAKYLQLLFPGGELMRIVCMAIFRHLRFLFGSYPSDPVAAETTNILARVVSSCARGMDLG
ALSACLAAVVCSSKQPPLRPLGSPAGDGASLILNSVLERATELLTDPHAASNYNMTNRQL
WQASFDEFFGLLTKYCVNKYETVMQSLLMQAPPNVAIIGSDAARAIGREMPVELLRASLP
HTDEHQRQLLLDFTQRSMPIGSSSSGDGGNGSHMNSESVLS
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atggaggggtttgaaagtaggggtagtattcaagaggctgcctcttctatcccgcaagat
ctcaaccaattgcagcttaattcctcaggagaggtattcgacgcatcgcagtatgcattt
tttggtaaagattctgttgaggaagttgaattgggaggtttagatgaagaggaggctcca
gttgggtttgatgaggaggagtttctgtataatagacaagaggttgacatatctctatct
gatattgatgacctatcattaacctttgaaaagttaaacaaggatgttagtggaactagg
agtgctggagtaattggtgatagaggatccagagaaagttcatctgctgctgagtgggcg
caggagcattttcctaactggattgatgaagagatacttgatgctgaaagcactcaggat
gggaaacgatggtcttcacacccatattcttcagctcgtccagcagactcgatgcctttg
tatagaacttcttcatatcctgagccccaacaacagcagctgcagcagcagcagcatcaa
catttttccagtgaaccaattctggtgccgaaatcagctttcacttcttatccacctcca
ggtggcagacctcagcaggcttcgccaaaccgccaagcaagccacctgaacccatatctt
tctggtgggccccagggggggttgtcttcaccaaacctatctccttactctagctctcaa
cttcaactgaatggattacctcatgtatcgcattttggtggaaatttgcctcagcttaac
cctggtctctctaatagccgaccccaaaagcaatgggccaatcaaagtggtgtttatgga
gatcatccgggtcttatgaacaatttgttgcaacaacagctagctcatcagaatggttta
gtgcctccacaattgatgcatcagcaacagtcacaaccacaggatcctagactgcatcat
ccagttcagccatcatttgctaatttgtcggtaatgcagtctcaactgtttaacccccat
ctttctgcatccccgcccttggtgagcaagtttgaagcaatgcttggtatgggtgatctt
ggagatcaaaggccaaaatcagctcagaaagttagaccgaatatgcgtttttctcaatat
ggatttgatacaggtagccacaggagggaaggtgggtggccacaatttaggtccaagtat
atgacagctgatgaaattgaaaatatactccgaatgcagctagctgcaacacacagcaat
gacccatatgtcgatgattactaccaccagttttgcctttcaagaaaatctgctggggcc
aagttgaaacaccatttctgcccaactcaattaagggatcttcctcctcgagcacgagct
aatactgaaccacatgcttttctccaggttgatgctcttgggagagtccccttctcctca
atacggaggcctcgccctcttcttgaagttgagcctccaaattcatctagccctggcaac
actgaacaaaaggtttttgagaagccgctagagcaggagccaatgcttgctgctagggtt
gcaattgaggatgggctttgtcttctcctggatgtggatgacattgatcgttttctacaa
ttcaatcaactccaagatggtggaacccaagtgaggcgtcggcggcaggccttgcttgaa
ggacttgcaggatctcttcaattagttgacccacttggcaacaatggccccacggttggg
cttcataaggatgatcttgtatttctaaggttagtctcacttcccaagggccggaagctc
ctggcaaagtacctgcagcttttatttcccggtggtgagctcatgcgaatagtctgtatg
gccatctttcgtcatttaaggttcttgtttggtagctacccttctgatccagtggctgca
gaaactacaaatattcttgcaagggttgtttcatcatgtgctcgaggtatggaccttggt
gcacttagtgcctgtcttgcagcagtggtttgttcctcaaagcaacccccgcttcgcccc
cttggaagccctgcaggagatggggcctctcttatcctcaattcagttcttgagagggca
actgaactcttaactgatcctcatgctgcaagcaactacaatatgaccaatcggcaactt
tggcaggcctcctttgatgaattctttggccttctgaccaagtactgtgtaaataaatat
gaaactgtaatgcagtcactgctaatgcaggcccctccgaatgtggctattattggctca
gatgcagccagggcaattggtcgtgaaatgccagttgaactgttgcgtgcgagccttcct
cacactgatgagcatcagaggcagctgttgttggacttcacgcagcggtctatgcccata
ggatcatctagcagtggtgatgggggaaatggttctcacatgaattcagagtctgtgctg
agttga
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integrated database retrieval system
