KEGG   Malus domestica (apple): 103407101
Entry
103407101         CDS       T03194                                 
Name
(RefSeq) vacuolar sorting protein 39-like
  KO
K20183  Vam6/Vps39-like protein vacuolar protein sorting-associated protein 39
Organism
mdm  Malus domestica (apple)
Pathway
mdm04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04148 Efferocytosis
    103407101
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:mdm04131]
    103407101
Membrane trafficking [BR:mdm04131]
 Endosome - Lysosome transport
  Tethering complex
   Hops complex
    103407101
SSDB
Motif
Pfam: Vps39_1 CNH zf-Vps39_C Clathrin zf-HC5HC2H AlaDh_PNT_N TPR_19
Other DBs
NCBI-GeneID: 103407101
NCBI-ProteinID: XP_008344274
LinkDB
Position
02:complement(join(11718848..11719048,11719309..11719407,11719620..11720072,11720162..11720404,11720644..11720865,11721423..11721752,11722298..11722727,11723507..11723619,11723709..11723852,11723944..11724075,11724304..11724515,11724611..11725046))
AA seq 1004 aa
MVHSAYDSFELISDCPTKIEAIESYGQKLLIGCSDGSLKIYAPDSSGSDRSPPSDYHGHK
LQKEPYALERNVAGFSKKPLVSMEVLESRELLLSLSESIAFHGLPNLGTIAVITKAKGAN
VYSWDDRRGFLCFARQKRVCIFRHDGGRGFVEVKEFGVPDVVKSMSWCGENICIGIRREY
MILNSTNGALSEVFPSGRIAPPLVVSLPSGELLLGKDNIGVFVDQNGKLCQEGRVCWSDS
PNVVVVQKPYAIALLPRYVEVRSLRDPYPLIQTVVLRNARRILQSNDAVTVALENAVYGL
FPVPLGAQIVQLTASGDFDEALALCKMLPPEEASLRAAKEGSIHMRYAHHLFDNGAYEDA
MEHFLASQVDITYVLSLYPSIILPKTTMVADPEKLMDISGDSLYLSRGSSGISDDMEHSL
PSLLESEESAALESKKMSHNTLMALIKFLQKKRYGIIEKATAEGTEEVVLDAVGDNFVSY
ESRFKKSNKGRGSIPVTSGAREMAAILDTALLQALLLTGQASVALELLKGLNYCDVKICE
EILQKNNHYAALLELYRCNSMHHEALKLLHQLVEDSKSNQVQTELIQKLKPESIVEYLKP
LCGTDPMLVLEYSMLVLESCPTQTIELFLNGNIPADLVNSYLKQHAPNMQATYLEFMLAM
DENGISGNLQNEMVHIYLSEVLDWYADLSTQQKWDEHTYSSTRKKLLSALESISGYNPEA
LLKRLPTDALYEERAILLGKMNQHELALSLYVHKLHVPELALSHCDRVYESLVHLPSSRS
SGNIYLTLLQIYLNPRKTTKNFEKRITNLVSPQNIGTPKVGSANMVKSKGGRGAKKIAAI
EVAPDIRVSQSSADSSKSDGDAEESSEEGGSKIMLDEVLDLLSRRWDRINGAQALKLLPR
ETKLQHLLPFMGPLLRKSSEAYRNLSVIKSLRQSENLQVKDELYEQRKGVVKVTSDSMCS
LCRKKIGTSVFAVYPNGKTLVHFVCFRDSQSMKTVGRGSPLWKI
NT seq 3015 nt   +upstreamnt  +downstreamnt
atggtacacagtgcctatgattccttcgagctcatcagcgactgcccgacgaagatcgaa
gccatcgaatcgtacggacagaagctcctcatcggctgctccgatggatctctcaaaatc
tacgctccggactcctccggctccgaccgctctccgccgtccgattaccacggtcacaag
ctccagaaggaaccgtacgcgctggagaggaacgtcgcgggtttctcaaagaagcccttg
gtttcaatggaggtcctggaatcgcgagagctcctcctttccctctcggagtcgattgcg
tttcacggcctcccgaacttgggcaccatcgccgtgatcacgaaggcgaagggcgccaat
gtctactcgtgggacgaccgcagagggttcctttgcttcgccaggcagaagcgggtctgt
attttccggcacgacgggggacgagggtttgtggaagtgaaggaatttggggttccggat
gtggtgaagtcgatgtcatggtgtggagagaacatatgtatagggattagaagagagtat
atgatactgaattctacaaatggtgcactgtcagaggtgtttccttcggggaggatagcg
ccgccattggtggtctctctcccttccggagagcttcttctgggaaaggataatattggg
gtttttgtggaccaaaacgggaagctttgtcaagaaggcagggtttgttggtcagattcc
ccgaatgttgttgttgttcagaagccatatgcaattgctctgttaccaagatatgtggag
gtacggtcgctccgagatccatatccattgatacagacggtagttcttagaaatgctcgt
cgtattctacagagcaatgatgctgtaactgttgcattagagaatgctgtttatggtctc
ttccctgttcctcttggtgctcagattgtacaattaacagcatctggcgattttgacgaa
gcattggcattgtgtaagatgcttcctccagaagaagcaagtcttagagctgcaaaggag
gggtcaattcatatgagatatgctcatcatctttttgataatggggcctatgaggacgcc
atggagcactttttggcatctcaagtggatataacctatgttctttctttgtatccatct
attattcttcctaagacaactatggttgctgatccggagaagctaatggatatttctggg
gattcattgtatctctcaagaggttcgtctggtatatcagatgatatggaacactctctg
ccttcactactggaatctgaggagagtgcagcactcgagtccaagaaaatgagccataac
actcttatggctctcataaagttcttacagaaaaaaagatatggcataattgaaaaggcc
actgctgaggggacagaagaggttgttttagatgctgttggagacaattttgtgtcctat
gaatctaggtttaagaaatcaaacaaggggcgtggcagcattccagttacctctggtgct
agggagatggcagcgatcctggatactgcactactccaagctctacttcttactggacag
gcttcagtggctttggaattactgaaaggtcttaactactgcgatgtaaaaatatgtgag
gagattctccagaaaaataatcactacgctgctttgttagaactttacaggtgcaattca
atgcaccacgaagctctaaaactcttgcatcaattagtagaggattctaaatctaaccaa
gtgcaaactgaacttatccaaaagttaaagcctgagtcaattgttgaatatctcaagcct
ctttgtgggactgatcccatgctggtcctggagtattcaatgcttgttcttgaaagttgt
ccaacgcagacaattgagctctttttgaatgggaatattccagcagacctggtcaactct
tacttgaagcaacatgctccaaacatgcaggccacatacttagagtttatgcttgcaatg
gatgaaaatggaatctctggaaatctgcaaaatgaaatggtacatatctatctatcagaa
gtacttgattggtatgcagatttaagtactcagcagaaatgggatgagcatacttactcc
tcaacaagaaagaaattattgtctgctttagagagtatctcaggatataatccggaggct
ttgttgaaacgtcttccaacggatgctttatatgaagagcgtgcaattttgttgggaaaa
atgaaccaacatgagcttgctttatctctctatgttcataagcttcatgttcctgagctg
gcactgtcccattgtgatcgcgtgtatgaatccttggttcatctaccatcttcaagatct
tccggaaatatatacctaactctattacaaatttatcttaatccgaggaaaacaaccaag
aactttgagaagcgaattacaaatttagtatcacctcagaatatcggtacaccaaaggtt
ggttctgcaaatatggttaaaagtaaaggagggcgtggtgctaaaaaaattgctgcaata
gaggtggcacctgacataagagtcagtcaaagtagcgctgacagtagcaagagtgatgga
gatgcagaggaatctagtgaggaaggagggtcgaaaatcatgcttgatgaggtccttgat
ttgttgagccgaaggtgggacagaataaatggagctcaggcactcaaacttttgccaagg
gaaactaagctacagcacttgcttccatttatgggacccctgttgaggaaatccagtgaa
gcgtacaggaacctttcagttatcaagagtttgagacaaagcgagaacctgcaggttaaa
gatgaactctacgaacaaaggaagggtgtggtgaaggtcaccagtgacagcatgtgctcc
ctttgcaggaagaaaataggaaccagtgtctttgccgtatatccaaacgggaaaacatta
gtgcactttgtgtgctttagagactcgcaaagtatgaaaaccgtgggcagaggatcgccg
ctatggaagatatga

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