KEGG   Malus domestica (apple): 103408851
Entry
103408851         CDS       T03194                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
mdm  Malus domestica (apple)
Pathway
mdm03022  Basal transcription factors
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    103408851
  09124 Replication and repair
   03420 Nucleotide excision repair
    103408851
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103408851
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103408851
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     103408851
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     103408851
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 YOMG_N
Other DBs
NCBI-GeneID: 103408851
NCBI-ProteinID: XP_008345891
LinkDB
Position
05:join(43323211..43323323,43323777..43323944,43324054..43324122,43324279..43324372,43324559..43324659,43324781..43324826,43324917..43324976,43325507..43325575,43326004..43326087,43326203..43326286,43326422..43326507,43326892..43326982,43327498..43327578,43327808..43327882,43327969..43328112)
AA seq 454 aa
MPQVRIIAKNFMDMVAALPAMKLDKLYENAFICEAILRSLPPLAKKYVLQLLCIEVPVTA
KSMEEWVLPDGVSKHRVAIDRLIQLRIFTETVDRKRETTYTLNPIFQTNLKKLLVHGVVL
PREPMPSNITVRLPSLEDLQAFALEQWECFLLQLINSSQSERPSNISSSMMKTFQRGLLS
QRDREAPRLTDSGFQFLLMDTNAQLWYIIREYISNSEERGLDSADLISFLLELSFHVTGE
AYNINTLNERQKNIIKDLADLGLIKLQQGRKDSWFIPTELATNLSVSLTDSSSRKQGFVV
VETNFRLYAYSTSKLHCEILRLFSRVEYQLPNLIVGAITKESLYSAFENGITGEQIISFL
QQNAHPRVAERVPSVPENVTDQIRLWETDLNRVEMTPAYYYDEFPTRELLEGASDFARGY
NALLWEDVNSKKMRLVVKAENHVHMREYLGRQRQ
NT seq 1365 nt   +upstreamnt  +downstreamnt
atgcctcaggtgaggatcatcgcgaagaatttcatggacatggtggccgccctgcccgcc
atgaagctcgacaagctatacgagaatgcattcatctgcgaagcaattctcaggtctctg
ccaccgttggctaagaaatatgtcttgcaactgttgtgcattgaagttccggtgactgcc
aagtcaatggaggagtgggtgcttcctgatggggtctcgaagcatagagttgcaattgat
cggctgattcaattgagaatatttactgaaactgtggacaggaagagggaaacaacctac
acactaaatcctatatttcagactaatctcaagaagcttctggtacacggtgtagttttg
ccgagagaaccaatgccttcaaatatcacagtgaggctcccaagcttggaggatcttcag
gcttttgccctagaacaatgggagtgtttcttgctgcaacttatcaactcatctcaaagt
gagaggccatcgaacatcagttcgtctatgatgaaaactttccagcggggtcttttgagt
caaagggatagagaagctccaagattaactgacagtggtttccagttcttgttgatggat
acaaacgcgcaactctggtacatcatcagagagtacatctctaactcggaggagcgtggg
ctagattctgcagatttgatttctttcctgctagaacttagttttcatgttacaggcgag
gcatataacataaatacattgaatgagaggcagaagaatataatcaaggatcttgcagat
ttgggactgatcaaacttcagcagggaaggaaagacagttggtttatacctactgaatta
gctactaatctatcagttagcttgacagactcatcatcgaggaaacagggatttgttgtt
gtggaaacaaacttcagactctatgcctactcaacatctaaattacattgtgaaatttta
cgtcttttctcaagggtagaatatcaacttccaaaccttatcgttggagcaataacaaaa
gaaagtttatatagtgcttttgaaaatggcatcactggagaacagataatttcttttctt
cagcagaatgcacatccacgcgttgcagagagagtaccatccgtacctgagaatgtcaca
gatcagattaggctgtgggaaacagatctgaatagggttgagatgactccagcttattat
tacgatgaatttccaacgagggaactcctcgagggtgcgtctgactttgcgcgaggctat
aatgctctgctgtgggaggatgtaaattcgaaaaagatgcgtttagtggtcaaggcagaa
aaccacgtgcacatgcgagaatatcttggacgtcaaaggcagtaa

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