Malus domestica (apple): 103408978
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Entry
103408978 CDS
T03194
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103408978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103408978
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103408978
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103408978
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103408978
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
103408978
NCBI-ProteinID:
XP_008346017
LinkDB
All DBs
Position
02:complement(join(31918256..31918879,31919340..31919402,31919482..31919572,31921182..31921251,31921455..31921531,31921615..31921724,31922504..31923106,31923264..31923344))
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AA seq
572 aa
AA seq
DB search
MLPHYNSFPRHSNQAHTTGISAPPPHQMQPQLGIRNPQIPVQFSNSNSMIAQPNFMNLPN
NLPPMQNNHLGMPQFGSVGPTSQPGQPNVGFFGSQSNGQGMNSVGQFCNLVQQVNQLMSS
QVPGQIFGHNMLNLQQQMNPNMGLPYGQFCLPNSMQNMNQFVPMQMQNPSQVRPNYAFQG
SNQAPRATMSQNVPLFANNQANLHSNQAGQQANQNQQNLGLPPVQGTQLLQGNNTNSNGG
YNSNSNWKQSPSRNFTKNPKNHQGGFQNPQSHHMKNAKGKFTFRNGHKGKGLRNESEGKF
ALANSSNQGKQGKRSLSLSYTEQEIERWREERRKHYPSKSNIEKKINEKMINSEIIEREA
NIRREQLKEILTKQAELGVEVAEVPSYYLADSNQGHVKEDNESLTKKGRLANKFGKREKY
DRKDRFSKRQRSHQKGSSNNPSFNKMEPNKREPTLLQKLLSADIRRDRSHLLQAFRFMVA
NSFFKDCPDKPLKFPTVAVKESSGEEEVAEKLSSLAEKDALKGSDKSMVGRVYNNHSGNN
NDVRNYDDSGDEDDGEGEGTETPGEEEEEIIN
NT seq
1719 nt
NT seq
+upstream
nt +downstream
nt
atgttacctcactacaattcctttcctcgccattccaaccaagctcacacgaccggtatc
tcggctccacctcctcaccagatgcaacctcaattgggtatcaggaatccccaaattcca
gtccaatttagtaattctaattccatgatagctcaacccaatttcatgaatctaccaaac
aaccttcctcctatgcaaaataaccatctgggtatgcctcagttcggttccgttggccct
acatctcagccgggtcagccgaatgttgggttttttggttcgcaaagtaacgggcaaggt
atgaactcggttgggcaattttgcaatttggtgcagcaagtgaatcaattgatgtcttct
caagtgcctgggcagatatttgggcataacatgttaaatttacagcaacagatgaacccg
aatatgggtttgccgtatgggcagttttgtttgccgaattccatgcaaaacatgaatcaa
tttgtgccaatgcaaatgcaaaatccatcgcaagtccgtcctaattatgctttccaggga
tcaaatcaagcacctcgggccacaatgtctcaaaatgtcccattgtttgcaaataaccag
gctaatctgcattctaatcaggcaggccagcaagctaaccagaatcagcaaaacttgggt
ctacctccagtgcaagggacacagcttctgcagggaaataatacaaacagtaatggtggt
tacaattcaaattccaattggaaacaatcaccaagcagaaactttacaaaaaatccgaag
aatcaccaagggggatttcagaatccgcagtcacatcatatgaaaaatgcaaagggaaag
ttcacttttcgtaatgggcacaaaggaaaagggttaagaaatgagagcgaaggaaagttt
gctctggccaactcttcaaaccagggcaagcaagggaaaagatctctttccttgtcatat
acggaacaagagattgagcggtggcgtgaggaacgtaggaagcactacccatcaaaatcc
aacatagagaagaagataaatgaaaagatgataaattcagagatcattgaaagagaggcc
aacattcgacgagagcaactcaaagaaattcttacaaagcaggctgagttgggagttgaa
gttgccgaagtaccatcatactacctcgcagattctaatcaagggcatgtaaaagaagat
aatgaatcattgaccaagaaggggagattggcaaacaagtttggtaagagagaaaaatat
gatagaaaggatcggttttccaagaggcaaagatcacatcaaaagggttcgtctaataac
ccttctttcaacaagatggagccaaacaaaagggagccaaccttgctgcagaagcttctt
agtgcagatattaggagagacagaagccacctgctgcaggcgtttaggttcatggtggca
aactctttcttcaaagattgtccagacaaacctttgaaatttcctactgtagcagttaaa
gaaagctcgggtgaggaagaggtggctgaaaagttgtcctcacttgcggagaaagatgct
ttaaagggaagcgataaatccatggttggaagagtttataacaatcattctggaaataac
aacgatgtcaggaattatgatgatagcggtgatgaagatgatggtgaaggagagggaaca
gagacacctggggaggaagaggaagaaatcataaactag
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