KEGG T03194: 103408982

Malus domestica (apple): 103408982

Entry

103408982         CDS       T03194

Name

(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X2

K10683

BRCA1-associated RING domain protein 1

Organism

mdm Malus domestica (apple)

Pathway

mdm03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:mdm00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    103408982
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103408982
   04121 Ubiquitin system [BR:mdm04121]
    103408982
   03036 Chromosome and associated proteins [BR:mdm03036]
    103408982
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103408982
Messenger RNA biogenesis [BR:mdm03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     103408982
Ubiquitin system [BR:mdm04121]
Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    103408982
Chromosome and associated proteins [BR:mdm03036]
Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     103408982
DNA repair and recombination proteins [BR:mdm03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     103408982

SSDB

Motif

Pfam:

BRCT_2 BRCT zf-HC5HC2H zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-C3HC4_3 zf-HC5HC2H_2 zf-C3HC4_4 zf-RING_UBOX zf-RING_6 zf-RING_5 RTT107_BRCT_5 zf-RING_10 zf-rbx1 PHD_NSD PTCB-BRCT zf-UDP

Other DBs

NCBI-GeneID:

103408982

NCBI-ProteinID:

XP_028959237

LinkDB

Position

05:complement(join(39987247..39987603,39987733..39987851,39987984..39988149,39988267..39988393,39988487..39988584,39988668..39988854,39989060..39989160,39989291..39990334,39990437..39990550,39990783..39991255,39991685..39991798,39991897..39991967,39992077..39992130,39992508..39992566))

AA seq 1027 aa
METPPPHLEKMGRELKCPICLSLLSSAVSLNCNHLFCNACIVKSMKSGSNCPVCKIPYRR
REVRPAPHMDNLVSIYKSMEHASGINIFVTQNAPSTKSSDGKQQAEDDFSHGEHDLPEFQ
DRAEKQKTLRGKGSRKAKANLKSSGSISIKPSFPNKKRVQVPQCPISETPTRHQKLEGDL
MADRAKQSSKTLKEKPVLNEKGEPVLSPFFWLNDKDVESLSQFSFGDQLTDLPSPNVPAF
SDIKDSDDENSVRLTQPGEVHGTSAHAADLFDSEIFEWTQIPCSPELFPSPPKMQGTEMQ
VGEDENDRVLLKELKEILQNKKSVELSAKSARSKRNKKSTGNMDFLPDLPAAGTNAVTNE
SDKRGRKAKNLTKRKCATSHTDPGTDINVTSKGSEVFYEGQACENNGSSLAKTRKRSKKE
HSSVVVTKPTYENVHVLSTRADSRINGDENGITVSPTSLGKNAGGDEPFSKKAGKMCREV
NDKNKIDRPVRSKKQKMVSMRQTMLEEVSEIQKQANKDTPTELSLINLPTDNQKASESRN
KSRKLARKDKLGDRELKRNKKVKVSSDDNSKDNTSVEIGEGHGHVNGNGNQPAEKSKGNC
NVVTNQSPVQKLPSLTKNVVLKRCEAIPSKIQCAFCLASEESEASGDIGHYYNGKPVAAD
HNGGLKVIHAHRTCAEWAPNVYFEEDTAINLEAELTRSRKIKCSCCAIKGAALGCYEKSC
RRSFHVTCAKLMPQCRWDTDNFVMLCPVHASSKLPNESPESQATRKKSNPKKQPNVECPK
VAAKQDSNTPPDQKFCGPSKKLVLCCSSLTNAERESVAGFERLSGLMVLKNWDSNVTHVI
ASTDENGACKRTLKVLMGILEGKWILNVEWINACTEAMKLVDEEPYEIKVDIYGIRDGPR
LGRLRLQNKQPKLFDGFKFYFMGDFLPSYKGYLQDLVIAAGGTILQRKPVPEGQKALSAG
SPKCQTYIIYSLELPDQCHRSKKSTIFNTRQADAKALASSDGAMAVSNSWVLNSIAACKL
QNLSDFE

NT seq 3084 nt +upstreamnt +downstreamnt
atggagactcctccgccccacctcgagaaaatgggcagagaactcaagtgccccatctgt
ttgagtctactgagttctgcggtttcactcaattgcaatcatctcttctgcaacgcttgc
attgtgaagtcgatgaaatcgggttccaattgtcctgtttgtaaaattccatatcggcgt
agggaggttcgcccggctcctcacatggataatttggttagtatttacaagagcatggaa
catgcttcgggaattaatatatttgtcactcagaatgcaccctcaactaaatcatcagat
ggaaaacagcaagctgaagatgattttagccatggcgagcatgatcttcctgagtttcag
gatagagctgagaaacagaaaaccttaagaggaaaaggatccaggaaagctaaagccaac
ctgaaaagttctggttctatttcaatcaaaccttcatttccaaacaagaaaagggttcag
gttccacagtgtcctatttcagaaaccccaacacgccatcaaaagttagaaggtgattta
atggctgatcgagctaagcagagttcaaaaacactaaaggagaagcctgttctaaatgaa
aagggagaaccggtgctgtcacctttcttttggttgaatgacaaagatgtagaaagtttg
agtcagttttctttcggtgatcaacttaccgatcttccatctccaaatgttcccgcattc
agtgatatcaaagactcagatgatgaaaactctgttagattgacccaaccgggggaagtg
cacggtacatctgctcatgctgcagatttatttgatagtgagatttttgaatggacacaa
ataccttgctctcccgaactcttcccaagtcctccgaagatgcagggaactgaaatgcag
gttggagaggatgaaaacgatagagttctattgaaggaactaaaagaaatcttacaaaac
aagaaatcagttgagctttctgctaaaagtgcaaggtctaaaagaaacaaaaaaagtact
ggaaatatggattttcttccagatcttcctgctgctggaactaacgctgttactaatgaa
tctgacaagcgaggtaggaaggcaaagaatctcactaaaagaaagtgtgctacaagtcat
acagatccaggaacagatattaatgtcacttcgaagggatctgaggtattttatgaagga
caagcatgtgagaataacggtagttctttggctaagactcgcaaaaggagtaagaaggaa
cattcatctgttgttgtaaccaagcccacatatgaaaatgttcatgtcctctctaccaga
gctgatagtcgaattaatggtgatgaaaacgggataactgtatcacctacttcattggga
aagaatgcaggcggtgatgaaccgttcagtaagaaagctggaaaaatgtgtagggaggtc
aatgacaagaacaagattgaccgcccagtaaggtcaaaaaaacaaaagatggtctccatg
cgacagacaatgcttgaggaggtatcagaaatacagaagcaagcaaataaggatactcct
actgagttgtctcttataaatcttcctacggataaccagaaagcctccgaatcccggaat
aaatccagaaaacttgctagaaaagacaagttgggagatcgagaactgaaaaggaacaaa
aaggtgaaagtttcttctgatgacaactcaaaggacaatacttctgttgagattggagaa
ggtcatgggcatgttaatggaaatggaaatcaacctgctgagaagagcaagggcaattgt
aatgttgtaactaatcaatcaccagtgcagaagcttccttcattgacaaagaatgtggtc
ttgaagagatgtgaggccattcctagtaaaattcaatgtgctttctgtcttgcatcagaa
gaatcagaggcttctggagatataggtcactactataatggcaagcctgtcgctgcggat
cacaatggaggactcaaggttatacatgcacacaggacctgcgctgaatgggctcccaat
gtctactttgaagaagatactgctattaatcttgaagctgaattaactaggagtcgtaaa
attaaatgttcttgctgcgcaattaaaggagcagctcttgggtgctacgagaagagttgt
cgtaggagctttcatgtcacctgtgcaaagttgatgcctcaatgtcgatgggatactgac
aattttgttatgttatgccccgttcatgcctcctctaagttgccaaatgaaagtcctgaa
tctcaagcaacgaggaagaagagcaatcctaaaaaacaaccgaatgttgaatgtcctaaa
gttgctgctaaacaagacagcaatacccctccagatcagaagttttgtggaccgtccaag
aaattggttctttgttgttcatccctcacaaatgcagagagggagtctgtcgctggattt
gaaagattatctggacttatggttttgaagaattgggattctaatgttacacatgttatt
gcatcgacagatgaaaatggagcatgcaaaaggaccctcaaagttttgatgggtatcttg
gaggggaagtggatcctgaatgtggagtggattaatgcttgcacagaggccatgaaacta
gttgatgaggagccttatgaaatcaaggtcgacatttatggaatcagggatggtcctcga
cttggtagactaaggctgcagaacaagcaaccaaagctttttgatggattcaagttttac
ttcatgggagactttctaccttcgtacaaggggtatctacaagaccttgtaatagctgcc
ggaggaacgattctgcaaagaaagcctgttccagagggccaaaaagccttgtcagccggt
tcccccaaatgtcaaacctacataatttacagcctcgagctgcctgatcaatgtcatcgt
agcaagaagagtacgattttcaacactaggcaggctgatgcaaaggctttggccagttcc
gatggagccatggcagtgagcaattcatgggttttgaactccattgccgcctgcaagtta
caaaatctttctgatttcgaatag

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