KEGG T03194: 103409196

Malus domestica (apple): 103409196

Entry

103409196         CDS       T03194

Name

(RefSeq) BRCA1-associated RING domain protein 1-like

K10683

BRCA1-associated RING domain protein 1

Organism

mdm Malus domestica (apple)

Pathway

mdm03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:mdm00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    103409196
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103409196
   04121 Ubiquitin system [BR:mdm04121]
    103409196
   03036 Chromosome and associated proteins [BR:mdm03036]
    103409196
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103409196
Messenger RNA biogenesis [BR:mdm03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     103409196
Ubiquitin system [BR:mdm04121]
Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    103409196
Chromosome and associated proteins [BR:mdm03036]
Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     103409196
DNA repair and recombination proteins [BR:mdm03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     103409196

SSDB

Motif

Pfam:

BRCT zf-HC5HC2H BRCT_2 zf-HC5HC2H_2 PTCB-BRCT PHD_NSD zf-C3HC4_4 zf-C3HC4_2 zf-RING_6 zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX Prok-RING_4 RTT107_BRCT_5 zf-RING_5

Other DBs

NCBI-GeneID:

103409196

NCBI-ProteinID:

XP_028958413

LinkDB

Position

05:complement(join(31313985..31314329,31314735..31314853,31315032..31315197,31315686..31315773,31316003..31316079,31316248..31316434,31316917..31317017,31317102..31317338,31317436..31317878,31317985..31318080,31318255..31318310,31318428..31318481,31318634..31318749))

AA seq 694 aa
MVDANPNRKCSDSGNTRSMMNPWVLHFQKLGLELKCPLCLNLLNRPTLLPCDHIFCNCCI
PSSSCPVCKAQVADRDLRPVPFMENIVAIYKSLDASFCANLFQPVSSDVRTILEQNPVLP
NISFAGKMTKEPFDNDQGGNSNSGQSIYSSSAHERVWAPCSLNRSVADGVGNNDNVDKCS
MPIDADGKVLDFARSGVGNPNSQPPSSQIRAGGLDECMTVVGDMNHAAQSLPNSPPSFGD
AKCSDNDSCGRRCEQISENSLVRRSISKIDDGRAGQKRHDSCATEIDGHLRKKIKYEPVL
ETYSELEHKFSTPPNESFTKRTICVFCQSSMISEVTGPMLHYSKERLVEGDEANASNVIH
VHRICIDWAPQVYFEGENVKGLKAEVSRGAKLKCTKCGLKGAALGCFVKSCRRSYHVTCA
TEISKCRWDKENFLLLCPAHRSTKFPGEKSNYGKPKICPQSNSLEAANEMNQWIICPSGL
SSEEKLLLVKFAKKTGATVSKTWRPNVTHLIAALDGDGAYVRTFKTCMAILAGRWILKID
WVKACMEATDHVNEEPYEVSLDNYGCCDGPKTGRLRATNNDPKLFNGLSFYFAGDFLLDR
KEDLQDLIIVAGGTVFNSSEEVMERSCLEHTASRTLVVYNLDPPEGCKLGEEVSILWKRS
NEAQDIAAKIGSQIIGHTWLLESIARCELQPFVC

NT seq 2085 nt +upstreamnt +downstreamnt
atggtggacgcaaaccctaaccgtaaatgcagcgacagtggcaataccaggtcgatgatg
aacccgtgggttctccatttccagaaactgggtctcgagctcaagtgccccctctgcttg
aatttgcttaatcgaccgacgttgcttccatgcgatcacattttctgcaattgctgcata
cccagttcgagttgcccggtttgtaaagctcaggttgcggaccgagatctcaggcctgtg
ccgttcatggaaaacatagtagcgatctacaaaagcttggatgcgtctttctgtgccaat
ttgttccagcctgtttcttccgatgttagaaccattctggagcaaaaccctgttttgcct
aatatcagttttgctgggaaaatgactaaagaaccatttgacaatgaccaaggaggtaat
tcaaacagtgggcaatccatctattcatcgagtgctcatgaacgagtttgggctccttgt
agtctgaatcgttctgtagctgatggagttggcaacaatgacaatgtagataagtgtagc
atgccaatagatgctgatggcaaggtattagattttgctagaagcggagtgggaaatccc
aattcacaaccaccaagttctcaaataagagctggtggactcgacgagtgcatgactgta
gtaggagacatgaatcatgcagcacagtcattgcccaacagtcctccttcatttggtgat
gccaaatgttcagataatgatagctgtggtcggcgctgtgagcaaatttcagaaaattct
ttggtcaggagatcgatcagcaaaattgatgatggtagagcagggcagaaaagacatgat
agttgtgcaactgaaattgatggtcatttaagaaagaaaataaagtatgagccagtttta
gagacttattctgagcttgaacataagttcagtacaccacctaatgaatcattcacaaag
agaacaatttgtgtattttgccagtcttctatgatctcggaggttacagggccaatgttg
cattattctaaagagagactggtagagggagatgaggcaaatgcttcaaatgtcatacat
gttcacagaatatgcattgattgggcaccacaagtgtatttcgaaggtgaaaatgttaag
ggattgaaggcagaagtctcaaggggtgcaaagctaaaatgcaccaaatgtgggctaaag
ggagcagctttgggatgctttgtaaagtcctgccggagaagctatcatgttacctgtgca
actgaaatttctaaatgtcgctgggacaaggaaaactttctgctgctatgtccagctcat
cgttcaactaaatttcccggtgagaagtcaaattatgggaagcccaaaatctgtccccag
tccaacagtttggaagctgcaaatgaaatgaatcaatggattatatgcccatccggtttg
tcttctgaagaaaagcttcttttagtcaagtttgccaagaagactggtgcaactgtgtcc
aagacctggagaccaaatgttacacatttgattgcagccctggatggggacggtgcatat
gtcaggacattcaaaacttgcatggccattttggctggaagatggattctgaaaattgac
tgggtaaaagcatgcatggaagccacagatcatgtgaatgaagaaccatatgaagttagt
cttgataactatggatgctgtgatggcccaaaaactggcaggcttcgggcaacaaacaat
gatccgaaactctttaatggtttgagtttctattttgctggtgattttttactggataga
aaggaagatcttcaagatttgatcattgtagcaggaggcactgttttcaacagctcagaa
gaagtgatggaacgaagttgtcttgaacatacagcttcaaggacgctagttgtatacaac
ctcgacccaccagaaggttgcaagttgggggaagaagtttcaatcctttggaaacggtca
aatgaggcccaggatatagctgcgaaaattggatcacaaatcatcggtcacacatggctc
ttggaatcaattgcaagatgcgagttacagccttttgtctgttga

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