KEGG   Malus domestica (apple): 103409890
Entry
103409890         CDS       T03194                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103409890
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103409890
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103409890
   03041 Spliceosome [BR:mdm03041]
    103409890
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103409890
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103409890
Spliceosome [BR:mdm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103409890
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 103409890
NCBI-ProteinID: XP_070680350
LinkDB
Position
06:complement(join(35341729..35341819,35341957..35342009,35342361..35342435,35342552..35342592,35342753..35342789))
AA seq 98 aa
MSSGPGLESLVDQTISVITNDGRNIVGVLKGFDQSTNIILDESHERVFSTKEGVQQLVLG
LYIIRGDNISIVGELDADLDSTVEWSKMRAYPLKPVIH
NT seq 297 nt   +upstreamnt  +downstreamnt
atgtccagtggccctggtcttgagtcactcgttgatcaaacaatttcagttatcacaaat
gatggacggaatattgtgggagtcttgaaaggctttgaccagtctactaatattattctt
gatgaatctcatgaacgtgttttttctacaaaggagggtgttcagcaactcgtgttgggg
ttgtacataatcagaggtgacaacataagcattgttggggaattagatgcagatcttgat
tctactgttgagtggtcgaagatgagagcttatcccctcaagcctgtcatccactga

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