Malus domestica (apple): 103410327
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Entry
103410327 CDS
T03194
Name
(RefSeq) serine/arginine-rich splicing factor SR34A-like
KO
K12890
serine/arginine-rich splicing factor 1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103410327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103410327
Spliceosome [BR:
mdm03041
]
Common components
Common spliceosomal components
SR proteins
103410327
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_YTH1
RRM_7
RRM_occluded
Nup35_RRM_2
CoV_nucleocap
SDP_N
Motif
Other DBs
NCBI-GeneID:
103410327
NCBI-ProteinID:
XP_070681131
LinkDB
All DBs
Position
07:join(36043923..36044009,36044261..36044326,36044451..36044525,36044622..36044733,36044861..36044907,36044986..36045043,36045215..36045264,36045344..36045400,36045645..36045724,36045835..36045871)
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AA seq
222 aa
AA seq
DB search
MSGRFSRTIYVGNLPSDIKEWEVEDLFYKYGRIVDIELKIPPRPPCYSFVEFESSRDAED
AIRGRDGYNFDGCRLRVELAHGGRGPSSSDRRSGYDRGSGGGQFGVSRHSEYRVIVRNLP
SSASWQDLKDHMRRAGDVCFAEVSRDSEGTYGLVDYTNSDDMKYAIRKLDDTEFKNPWAR
THIWVKYYDRSPSRSRSRSRSRSRSVRRNRSKSLERSVSKSV
NT seq
669 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcgattttctcgcacaatctatgttggcaaccttccctcagatataaaagaa
tgggaggttgaagatctattctacaagtatggccgcatagtggatattgaactgaagatt
ccaccacgtcctccgtgttattcatttgttgagtttgaaagttctcgggatgcagaagat
gcaataagagggcgtgatgggtataactttgatggttgccgtttaagggttgaacttgcc
catggtggtaggggaccatcttcaagtgatcgtcgtagtggatatgaccgaggcagtggt
gggggtcagtttggcgtttcacgtcattctgagtatcgagttattgttcgaaatctccct
tcttccgcctcttggcaagacttgaaggatcatatgcgtagagctggtgatgtgtgtttt
gctgaggtttctcgtgacagtgaagggacttatggcttagttgattataccaattctgat
gacatgaaatatgccatccggaagcttgatgacactgaatttaaaaatccttgggcaaga
actcatatttgggttaaatattacgataggagcccctcaaggagccgtagtagaagtcgt
agcagaagccggagtgtaagaaggaatcggagcaagtcgttggagcgatctgtatcaaaa
tcggtatga
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