KEGG   Malus domestica (apple): 103411061
Entry
103411061         CDS       T03194                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-3-like
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
mdm  Malus domestica (apple)
Pathway
mdm03022  Basal transcription factors
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    103411061
  09124 Replication and repair
   03420 Nucleotide excision repair
    103411061
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103411061
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103411061
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     103411061
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     103411061
SSDB
Motif
Pfam: BSD PH_TFIIH
Other DBs
NCBI-GeneID: 103411061
NCBI-ProteinID: XP_070682544
LinkDB
Position
08:join(30687961..30688065,30688447..30688525,30688740..30688804,30688913..30688976,30689499..30689625,30690740..30690815,30691011..30691106,30691327..30691371,30691519..30691575,30691718..30691873,30691981..30692046,30692478..30692601,30692777..30692837,30692950..30693079,30693189..30693380,30693488..30693601,30693784..30693861,30693995..30694042,30694727..30694786,30695069..30695155)
AA seq 609 aa
MSSSSSSSSRRVVKRAQYKDAARLKNPGILGVLTMVENKFVFKPNDPTSIQTLDVEFRHI
KGHKNTKEGSKQAPLLNLSSSREVKSYIFEFQSFPDLHECRDFVANALSKASEAAKTGPK
KVGVTLPDEQLSAAEMELRMKLLQEDSELQKLHMQFVISGVLTESEFWATRKKLLDGESH
TKPKQRVGFKNSMILDTKPTSDGRMNKVTFNFTPEIKYQIFALKPAVHQAFLELVPSKMT
AKDFWTKYFRAEFLHSTKNAAAIAAEAAEDEELAIFLKEDEILAREAHQKIRQVDPTLDM
EADQGDDYTHLPDHGIFRDGSKDITELQNEQYRRTLSQDLNRQGAVVLQGRTVDGDLEDP
NNVAEALMRSRQDYSPDVLAEPDESAVQERLDRITRMNEIDDLREPRDHRVAQLCIKDPR
DYFDTQQANALKALDDSRIGTEQKKCSMTTEEAYGSLKESISKIKSIGLKNSTVAPEIAL
MVLNGLTQNISSTKYQLGKNPRESILDSLPNKTKEELLHHSMSIQELLRHFWSTYPITTA
YLSTKVGKLKDAMSQIYRQLEEIKESDFRHQVSLLVRPMHQALDAAFQHYESDLQKRAAT
VARMPNGNA
NT seq 1830 nt   +upstreamnt  +downstreamnt
atgtcttcttcatcgtcctcgtcgtcgaggcgagtggtgaagcgtgcacaatacaaggat
gcagcaagattaaagaaccctggcattctcggcgttttaactatggttgagaacaagttt
gtgttcaagccaaacgatcccacgtctatccaaacccttgatgtggagtttagacatatt
aaaggtcacaaaaacactaaggagggatccaagcaagcacctttgcttaatctcagcagc
agtcgtgaggttaaaagttacatttttgagtttcaaagttttcccgatcttcatgaatgc
cgtgattttgtagccaatgccctatctaaggcttcagaagctgcaaaaactggtcctaaa
aaagttggagttacattgcctgatgaacaactcagtgcagcggaaatggagctccgtatg
aagctattgcaagaagacagtgaactgcagaaacttcatatgcagtttgtaatcagtggt
gttttgacagaatctgagttctgggcaactaggaagaagttgcttgatggagagagccat
acaaagccaaaacaacgggttggttttaaaaattcaatgattttggacaccaaacctaca
agtgacggtcggatgaacaaggttacgtttaatttcactccagagattaaatatcagatc
tttgctctcaaaccggctgttcaccaggcatttcttgaactagtgcccagtaagatgaca
gcaaaagacttctggacaaaatatttcagagctgaattccttcacagtacaaagaatgct
gctgcaattgcggcagaagctgctgaggatgaggaactggcaatttttttaaaggaggat
gaaatattggcaagggaagctcatcagaagattcgacaggttgatccaactttggatatg
gaagctgaccaaggggatgattatacacatcttcctgatcatgggatctttcgtgatggt
agcaaggacatcactgaactacagaatgagcaatacaggaggactttatcacaagacctt
aacaggcaaggggctgttgttcttcaaggcagaactgttgatggggatttagaagatcca
aataatgttgcagaggcacttatgcggtcaagacaggattattcgccggatgttttggca
gagcctgatgagagtgctgtgcaggagagacttgataggattactcggatgaatgagata
gatgaccttcgagaacctcgcgatcatcgtgttgctcaattatgtattaaggatcctcga
gactactttgacacgcaacaagccaatgcacttaaagctttggatgactcacgaatagga
acggaacaaaaaaaatgcagcatgactactgaggaagcatatggctccttgaaggagtct
atatctaaaattaagagcattggattgaaaaattccactgttgcaccagaaattgctctt
atggttcttaatggactgactcagaatatttctagtaccaagtatcaactcggaaagaat
cctcgggagagtattctggacagtttgccaaacaaaacgaaagaggaactgctgcatcat
tcgatgtccattcaagaattactgcggcatttttggtctacatatccaattacaacagct
tatctttctacaaaggtaggcaaactgaaggatgccatgtcacaaatctatcgacagcta
gaggagataaaggaatcagacttccggcaccaggtttctctccttgttcggccaatgcat
caggcacttgatgcggcttttcaacattacgaatctgacttacagaaaagagctgcaact
gttgcaaggatgccgaatggaaatgcatag

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