KEGG   Malus domestica (apple): 103411288
Entry
103411288         CDS       T03194                                 
Name
(RefSeq) cleavage stimulation factor subunit 77 isoform X1
  KO
K14408  cleavage stimulation factor subunit 3
Organism
mdm  Malus domestica (apple)
Pathway
mdm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103411288
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103411288
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     103411288
SSDB
Motif
Pfam: Suf HAT_PRP39_N HAT_PRP39_C HAT_Syf1_CNRKL1_N TPR_14 HAT_Syf1_CNRKL1_C TPR_15 TPR_19 TPR_2 TPR_9 TPR_CcmH_CycH TPR_16 TPR_Slam TPR_Edg1 ANAPC16
Other DBs
NCBI-GeneID: 103411288
NCBI-ProteinID: XP_070660889
LinkDB
Position
09:complement(join(4835..4992,5126..5335,5806..5979,6274..6375,6454..6520,17665..17817,24294..24353,24581..24677,25510..25574,25942..26082,26413..26481,26575..26633,26861..26981,27601..27664,28529..28575,29565..29693,29846..29986,30798..30859,31643..31743,32186..32295,32659..32721,32831..32895,33009..33042))
AA seq 763 aa
MEPESRKVGDQDHKFIDDKYSVEASENQANEALRLPITEAAPIYEQLLTVFPTAAKYWKQ
YVEAQMAVNNDDATKQIFSRCLLNCLQIPLWRCYIRFIRKVNDKKGVEGQEETRKAFDFM
LSYVGADIASGPVWMEYLTFLKSLPALNTQEESQRMTAVRKVYQKAIVTPTHHIEQLWKD
YENFENSVSRQLAKGLLSEYQPKFNSARAVYRERKKYVDEIDWNMLAVPPNGSYKEELQW
MAWRKLLAFEKGNPQRIDNGSSNKRIIFTYEQCLMYLYHYPDLWYDYAMWHAKSGSVDTA
IKVFQRALKVLPDSEMLRYAYAELEESRGAIQPTKKIYEGLLGDGINTSALAHIQFIRFL
RRNEGVEAARKYFLEARKSPNCTYHVYVAYAMMAFCLDKDPKMAHNVFEAGLKRFMHEPV
YILEYADFLTRLNDDRNIRALFERALSSLPSEESVEVWKRFTIFEQTYGDLASMLKVEQR
KKAALTGAGEEGPSSLESSLQDVASRYSFMDLWPCSSKDLDHLARQEWLAKNINKKVEKS
SMLNAPGFAEEGSASLISNLAASSQVVYPDTNQMVIYDPRQKPGAENFQTTTAAVVPTAS
KSISNPMISAVCGQTISSFDEILKATPPTLVAFLANLPAVEGPTPDVDVVLSICLQNDVP
TPQPGKSGTAPMPLASIPAPSTSDLSVSSKSHPIPSGSSFKPTRGKRKHLDSQEDDETTV
QSHPLPRDAFRIRQIHKARGTTSQTGSASYGSAISGDVSGSTG
NT seq 2292 nt   +upstreamnt  +downstreamnt
atggaacccgagtctcgaaaagttggagatcaagatcacaaattcatcgatgataaatac
agtgttgaagccagcgaaaatcaagccaatgaggcactacgtttgcccattacagaggca
gcaccaatatacgagcagcttttaacggtgtttcccactgcggcaaaatattggaagcaa
tatgtggaggcgcaaatggctgtaaataatgatgatgccacaaaacagatatttagccgg
tgtctattgaattgtctgcaaattcctctttggcgatgctacattcgtttcatcagaaag
gtcaatgacaagaagggggtagagggtcaggaagagactagaaaagcttttgattttatg
ctcagttatgttggagcagatatagcatccgggcctgtgtggatggagtacctcactttt
ttaaagtctttgccggctttaaacacacaggaagagtcacagcgcatgactgctgtgcga
aaagtataccagaaagccattgttactcctacccatcacatcgaacaactctggaaggat
tacgaaaattttgaaaattctgtcagccgtcaactggcaaaaggactgttatctgaatat
caacccaaatttaacagcgccagggccgtttatagggagcggaagaagtatgttgatgaa
attgactggaatatgcttgctgtaccaccaaatggctcttataaggaagaactacaatgg
atggcatggagaaagttattagctttcgaaaaaggaaacccacaaaggatagacaatgga
tcatccaacaagcgaatcattttcacttatgagcagtgtctaatgtatctataccattat
cctgatttatggtatgactatgccatgtggcatgcaaaaagtggttctgtagatactgca
attaaagtatttcaaagagcattgaaggttcttcctgactcggagatgcttagatatgct
tatgcagagctggaagaatcccgtggagcaattcagcccacaaagaaaatatatgaaggc
cttttgggagatggtattaacacatcagcacttgctcatatacagtttattcgcttttta
aggagaaatgaaggagtggaagcagctcgcaagtactttttagaggcgcgcaaatctcca
aactgcacgtaccatgtttatgttgcttatgcgatgatggctttctgtcttgacaaggat
ccaaagatggcacacaacgtttttgaagctgggttgaaacggtttatgcatgagcctgtt
tacattcttgaatatgcagactttttaactcgtttgaatgatgatagaaatattcgggcc
ttatttgagagggcattaagctcattaccatcagaagaatctgtcgaggtatggaagcga
ttcaccatttttgagcaaacttatggagatttggctagcatgttgaaggttgaacaaagg
aaaaaagcagcacttaccggagcaggtgaagagggaccttcatcattggaaagttcattg
caagatgttgcatcacgatatagtttcatggatctctggccctgctcttcaaaggacttg
gatcatttagcccgacaagagtggcttgctaaaaatatcaataaaaaagtggagaagtca
agtatgttgaatgcacctgggtttgcagaagagggttctgcgagcctgataagcaattta
gcggcgtcatcacaagtagtttacccagatactaaccaaatggttatctatgatccaagg
caaaaacctggggcagaaaattttcaaaccacaacagcagctgtagttcccactgcgtct
aaatccatatcaaatcccatgatttcagcagtgtgtggtcaaacaatcagttcatttgat
gaaatattaaaagcaacaccacctactttggtagccttcttagcaaatttgccagctgtt
gagggtccaacaccagatgttgatgtcgtgttatcgatttgtttgcaaaatgatgtacca
acaccacagcctgggaagtcagggactgctccaatgccattggcatctatacccgcccct
tctacaagtgacctttctgtttcaagcaagtctcatcccatcccaagtggatcatctttc
aagccaaccagggggaaaaggaaacatttagatagccaggaggacgacgaaacgacggtc
cagagtcacccgctcccaagagatgctttcaggatacggcagatccacaaggctcgcggt
accacttcacagactggatcagcttcatatggaagtgcaatttctggagatgtatctggc
agcactggctaa

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