KEGG   Malus domestica (apple): 103412127
Entry
103412127         CDS       T03194                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1-like
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103412127
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103412127
Enzymes [BR:mdm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103412127
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     103412127
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_5
Other DBs
NCBI-GeneID: 103412127
NCBI-ProteinID: XP_028951913
LinkDB
Position
02:complement(join(34531315..34531644,34532389..34532503,34533510..34535137,34535250..34535390,34535499..34535672,34536775..34537049,34537926..34538077,34538722..34538864,34538964..34539039,34540401..34540576,34540731..34542779,34543648..34543815,34544552..34544605,34545289..34545404,34545555..34545681,34546144..34546224))
AA seq 1934 aa
MEEVSTSNILDGEIVGIKFGLATHQEICTASISDCSISHASQLSNPFLGLPLEFGKCESC
GTSEPGKCEGHFGYIELPVPIFHPNHVSELKRMLSLLCLKCLKMKKNKFPTKNAGLAERM
LASCCEDAAQVCIGETKPTDSSCSLQLKRPSKSRTPPGFWNFLERYGFRYGDDHIRTLLP
CEVMEMLKRIPQDTRKKLNARGYFPQDGYILRHIPVPPNCLSVPEISDGVSVMSADPSIS
MLRKVLKQIEVIRSSRSGIPNFESQIVEANELQAIVDQYLQVRGTGKASRDIDARFGVNK
ELNASSTKAWLEKMRTLFIRKGSGFSSRSVITGDAFRRVNEVGIPYEIAQRITFEERVND
HNIRYLQQLVDSKLCLTYRDGSSTYSLREGSKGHTFLRPGQVVHRRIMDGDLVFVNRPPT
THKHSLQALQVYVHDDHVVKINPLICGPLSADFDGDCIHLFYPQSLAAKAEVLELFSVEK
QLLSSHSGKPNLQMATDSLLSLRMMFKNFFLDKSAAQQLAMFASSLLPRPALLKANAACS
YWTALQILQTALPLDFDYCGEKYLVNKSEILKIEFSTSAVSAVMNDIATSVFFEKGGEDV
LKFFDSLQPLLMENIFSEGFSVGLEDFYMSKTSIQDIKENIQGTSDLLYHLRSTYNEFVE
FQLESRIKSLKVPVSNFILESSAFGDLIDTKSDSAINKVVQQIGFLGLQLSDKGRFYSKT
LVEDVASLCHNKYSFNSEYPSAEYGLVQSCFFHGLDPYEEIVHSIATREVIVRSSRGLTE
PGTLFKNLMAILRDVVICYDGTVRNVCSNSVIQFEYGVNAGSRPPNLFPAGEPVGVLAAT
AMSNPAYKAVLDSTPSSNSSWELMKEILLCKVNFKNELIDRRVILYLNNCGCGRKYCRER
AACLVKNQLKKVSLKDTAVEFMIEYSNQLSSLGSMVNDAGLVGHIHLNEELLRELNVGVD
EIQQKCQETVNSFRRKRVGKKKFNIGYLFKNTVLFASEHCSFHHSCADKGSDSPCLMFFL
QATEELETTSQYYADLICPVLLETIIKGDPRITSANIIWIDPDTTTWIRSPNNSQKGEWA
LDVVLERSVVKQSGDAWRIVLDSCLPVLHLIDTRRSIPYAIKQIQELLGVSCAFDQAVQR
LATAVTMVAKGVLKEHLILLANSMTCAGNFVGFNSSGYKALSRALNIQVPFTEATLFTPR
RCFERAAEKCHMDSLSSIVASCSWGKHVAVGTGSRFDILWDTREGGLNQEGGLDVFNFLH
MVSTANGEEATTGALGAEVDDLMVVDELADSCLSPELDSGLDKPVFEDIIEFEESETLPG
KSSWEKDSSVWGTNRTREDATSSWDKNDTSSWDKTPAKEPATSTWGIGKAAEVTTPAWRA
NTAGEASTSAWGETGEPTTSAWGASKGGENDWSGRVAEKVAPIDLQPTIKAVDEKDNGWG
AVSPRETETGNDNAWSSGQQKKSSEISTSSWGQKNPPETETQPWGAVSSGETETGNDNAW
SSGQQKKSSEISTSSWGQKNAWSSGQQKKSSEISTSSWGQKNPPETETQPWGAVSSGETE
TGNANAWSSGQQKKSSEISTSSWGQKNPPETETQPWGAVSYGETETGNDKAWSSGQQKKS
SEISTSSWGQKNPPVIETQPWGAVSSGETESGNDNAWSSGQQKKSSEISTSSWGQKNPPE
TETQPASLSGWDSPSGDGNTGERHHQWGQNKKSRFEGSKSWVSSPGEWKNKNRPAKPPGM
VNDNSSVVGLYTATRQRLDMFPSEEQDVLSKIEPVMRSIRRIMHQSGYNDGDPLSADDQS
FILDNVLNYHPDKAVKMGSGIGHLTVDRHGSFQDSRCFFVVTTDGHKEDFSYRKCLENYI
KEKYADVAETFIGKYFTRRGGNRERNPTPSQYPIPEQTPCQTPIAEQTISQTPIAEQTLS
QTPISEQTGNEETQ
NT seq 5805 nt   +upstreamnt  +downstreamnt
atggaggaggtctcgacctcgaatattttggatggggagatcgttggaatcaaatttggt
ttagcaactcatcaagaaatttgtacagcatctattagcgattgctctatcagccatgca
agccagctttccaacccattccttggcctgccccttgagtttggaaagtgtgaatcttgt
ggcacttccgaacctgggaaatgtgaaggtcattttgggtatattgagttaccagtacca
atatttcatcccaatcatgttagcgaattgaagcggatgctgagcttattgtgcttgaaa
tgcttgaaaatgaaaaagaacaagtttccaaccaagaatgctggcttagcagaaagaatg
ttagcttcatgttgtgaggatgctgcacaagtgtgtattggagagactaaaccaacagat
agctcttgttccttgcaattgaagcgaccttctaaatcaagaacaccacctggtttttgg
aatttcctcgaacgatatggttttcgttatggcgatgatcatatacgtactttgcttcct
tgtgaggtgatggagatgctaaagcgtatccctcaagacaccaggaagaaacttaatgca
agagggtattttcctcaagatggatacatcttgcgtcatatacctgtccctccaaactgt
ttatctgttcctgaaatttcggatggtgttagtgttatgtctgcagatccttcaatttca
atgctcagaaaagttctaaagcaaattgaagtcataagaagttcaaggtcaggcatccca
aactttgaatcacaaattgttgaagctaatgaacttcaagccatagtggatcagtatctt
caagttaggggtactgggaaggcatcacgggatatagatgcaaggtttggggtaaacaag
gagctgaatgcctcttccactaaagcatggcttgaaaaaatgagaacactgttcattaga
aagggttcaggattctcttctcgctcagtaatcactggggatgcctttagaagggtaaat
gaagttggcatcccctatgaaattgctcaaagaatcaccttcgaggagagggttaatgat
cataacattaggtacttacaacagttggtagatagcaagttgtgcctaacctatagggat
ggatcatcaacttactcacttagggaaggttcaaaggggcacacttttttgaggcctggt
caagtggtgcatcggaggattatggatggggaccttgtatttgtaaacaggcccccaact
acccataaacattccctacaagcactacaagtgtatgtgcatgatgaccatgtggtgaaa
ataaatcctttgatatgtgggccactaagtgctgactttgatggtgattgcatccatttg
ttctatccgcaatcacttgctgcaaaagcagaagttttggagcttttttcagtggagaag
cagctgcttagctctcatagtggaaaaccaaatctgcaaatggccactgattcactattg
tcattgaggatgatgtttaagaacttttttttggataaatcagcagctcagcaactggcc
atgtttgcttcatctttgttgccacgacctgcattattgaaagcaaatgctgcttgctca
tattggactgctttgcagatattacagactgcattgcctcttgactttgactactgtggg
gaaaagtacttagtcaataaaagtgagatactgaaaattgagttcagtacaagtgcagtt
tcagcggtgatgaatgacattgctacttcagttttttttgagaaagggggcgaggatgtc
cttaaattctttgattctctacagcccttgctgatggagaatatattttcagaagggttc
agtgttggcttggaggatttttacatgtcaaagacatccatacaagatattaaggagaat
attcagggtacttcagatttgttgtatcatctgaggtcaacctacaatgaatttgtagag
tttcagctagagagtcgaatcaaaagcttgaaagtaccagtttcaaattttatcttggag
tcatctgcattcggtgatttaatcgacaccaagagtgattcggcaatcaacaaagttgtg
caacaaattgggttcctaggcctacaactctctgataagggaagattctactcaaagaca
ttggttgaggatgtggcctctctctgtcacaacaaatattcttttaactcggagtatccc
tctgcagaatatggcctagttcaaagttgtttcttccatgggttagatccatacgaggaa
atagttcactccattgctacacgagaggtgattgttcggtcctcaagaggattgactgaa
cctgggaccttatttaaaaatttaatggccattcttcgtgatgtggttatttgctatgat
ggcacagtcagaaatgtttgtagcaattcagttatccaatttgagtatggagtcaatgct
ggatctaggcccccgaatcttttccctgctggtgaacctgttggcgtgttagctgccact
gcaatgtcaaatcctgcgtacaaggcagttcttgattctaccccaagcagcaactcttca
tgggagctgatgaaggaaattctactttgcaaagtaaattttaagaatgagctcattgat
cgccgtgtaattttgtacttgaataactgtggttgtggaagaaagtactgccgagaacgt
gcagcatgtttggttaagaatcagttgaagaaagtcagtcttaaagatactgcagtcgaa
ttcatgattgaatatagcaatcagctttctagtttgggaagtatggtaaatgatgcaggc
ctagttggccatattcatctcaatgaggagctgttacgggagttaaatgttggtgtagac
gagattcaacaaaaatgccaagaaactgttaattcatttcggaggaagagagttgggaag
aagaagttcaacattggctatcttttcaaaaatacagttttgtttgccagtgagcattgc
tcttttcatcattcctgtgcagacaaaggatctgactccccgtgcttgatgttcttcctt
caagctactgaagagttggaaaccacttcgcaatactatgctgatttgatttgccctgtg
cttttagaaacaataataaaaggtgacccacggattacctcagcaaatataatttggatt
gatcccgatacaacaacttggattagaagtccaaataattctcaaaagggtgaatgggcc
ttggatgttgttctggagagatctgttgtcaagcaaagcggtgatgcatggagaatcgtt
ctcgattcttgcctccctgtgcttcacctaattgacaccaggcgttccatcccgtatgct
atcaaacagattcaagaactattgggagtgtcttgtgcttttgatcaagcagttcagcgc
ctcgcgacagctgttacaatggtggcaaaaggtgtcctgaaagagcatcttatcctcctg
gcgaatagcatgacatgtgctggaaattttgttggcttcaattctagtggatataaagca
ctatctcgagcattgaatattcaagtaccatttacagaagcaacactttttacaccaaga
aggtgctttgagagagcagctgaaaagtgccacatggattctttgtcaagcatagttgca
tcatgttcatggggtaaacatgttgctgttggtactggctccaggtttgatatcctctgg
gacacaagagagggaggattgaatcaagagggtggactagatgttttcaactttctgcat
atggtgagcacagcaaatggagaagaagcaactacaggagcactgggggcagaagttgat
gatcttatggtggtagatgaattagcagattcctgcttgtcgccagaacttgactctggt
ttagataagcccgtctttgaagatattatagaatttgaggaatcagaaactcttcctgga
aagtcaagttgggaaaaagattcctctgtatgggggacaaatcgtacaagagaagatgcc
acatcatcgtgggataaaaatgatacatcatcgtgggataaaactccagccaaagaacct
gccacatctacatgggggataggcaaggcagcagaagttactactcctgcatggagggca
aatactgctggagaagcttccacatctgcctggggggaaactggagagcctaccacttct
gcctggggggcaagtaagggaggtgaaaatgattggagtggtagagtggcagagaaagtt
gcaccaatagacctccagccgacaataaaagccgtagatgaaaaggacaatggatggggt
gctgtttctcctagggaaacagaaacagggaatgacaatgcttggtctagtgggcaacag
aaaaagtcttctgaaatttcgaccagttcttgggggcagaaaaatcctcctgagacagaa
actcaaccttggggtgctgtttcttctggggaaacagaaacagggaatgacaatgcttgg
tccagtgggcaacagaaaaaatcttctgaaatttctaccagttcttgggggcagaaaaat
gcttggtctagtgggcaacagaaaaagtcttctgaaatttcgaccagttcttgggggcag
aaaaatcctcctgagacagaaactcaaccttggggtgctgtttcttctggggaaacagaa
acagggaatgccaatgcttggtctagtgggcagcagaaaaagtcttctgaaatttcgacc
agttcttgggggcagaaaaatcctcctgagacagaaactcaaccttggggtgctgtttct
tatggggaaacagaaacagggaatgacaaggcttggtctagtgggcaacagaaaaagtct
tctgaaatttcgaccagttcttgggggcagaaaaatcctcctgtgatagaaactcaacct
tggggtgctgtttcatctggggaaacagaatcagggaatgacaatgcttggtctagtggg
caacagaaaaaatcttccgaaatttctaccagttcttgggggcagaaaaatcctcctgag
acagaaactcaacctgcgagcttgtctgggtgggattcacctagtggagatggtaatact
ggtgaaagacatcaccaatgggggcagaacaagaaaagtcgttttgaaggttcaaagagt
tgggtttctagtcccggggagtggaagaataagaaccgtcctgccaaaccacctggtatg
gtgaatgataactctagtgtggttggactctatactgcaacaagacaaagattggatatg
ttccctagcgaggagcaagacgttctttctaaaattgaacctgttatgcgctctatccga
agaataatgcatcaatctgggtacaatgatggggatccactgtcagctgacgaccagtca
tttatacttgataatgttctcaattaccacccggataaagctgttaaaatgggttctgga
attggtcatctcacagttgataggcacggcagtttccaggacagcagatgcttttttgtt
gtgacaacagatggtcacaaggaagatttttcatatcgaaaatgcctggagaattacatt
aaggaaaagtatgctgatgttgcggaaacattcataggcaagtattttactaggagagga
gggaatcgggagcgaaaccccactccaagtcaatatcccattccagaacagactccatgt
caaactcccattgcagagcaaactataagtcaaactcccattgcagagcaaactctaagt
caaacccccatttcagagcaaactgggaacgaggagacacaatag

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