KEGG   Malus domestica (apple): 103413077
Entry
103413077         CDS       T03194                                 
Name
(RefSeq) DNA ligase 1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03410  Base excision repair
mdm03420  Nucleotide excision repair
mdm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103413077
   03410 Base excision repair
    103413077
   03420 Nucleotide excision repair
    103413077
   03430 Mismatch repair
    103413077
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103413077
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103413077
Enzymes [BR:mdm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103413077
    6.5.1.6  DNA ligase (ATP or NAD+)
     103413077
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103413077
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    103413077
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     103413077
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103413077
   NER (nucleotide excision repair)
    Other NER factors
     103413077
   MMR (mismatch excision repair)
    Other MMR factors
     103413077
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 103413077
NCBI-ProteinID: XP_070663990
LinkDB
Position
11:complement(join(13500834..13500902,13500981..13501058,13501168..13501245,13502086..13502142,13502228..13502301,13502405..13502476,13502742..13502803,13502891..13502992,13503298..13503410,13503631..13503762,13504105..13504192,13504650..13504744,13504873..13505103,13505332..13505448,13505529..13505630,13506165..13506281,13506559..13507170))
AA seq 732 aa
MSSHPSAFDVLMSGARASAAKKKLQPSSLKKRKTLDSTNPIEKPQLLSAPESAGTTQDPE
SPSCGSSEVVPAGKKVCVAAGAEERTEELKSRMRLLKKKGREFDPKLVANWGQGERIPFV
FVCLVFDLIDKETGRIVITDIVCNMLRTVMYTTPEDLVPMIYLAANRIAPAHEGLELGIG
DGSIIKALAEACGRTEAHVKKQYKERGDLGRVANGNRSSQSTMHKPDALTVAKVFSTFRQ
LAKESGKDSQERKKNHIKALLVAATDREPLYLIRLLQTKLRIGLAEQTLLAALGQAAVYT
EKNSTPPPHIQSPLEEAAKIVKQVYSLLPDYDKIVPALLSGGVWNLPEICNFTLGVPVGP
MLAKPTKGVSEIVQKFQDTEYTCEYKYDGERAQIHFMENGSVEIYSRNAERNTGKYPDVV
VAVSRLKKSSVTSFVLDCEIVAYDREKQKILPFQVLSTRPRKNVSVSDIKVEVCIFSFDM
LYLNGRPLIQEQLKVRRECLYDSFVEEAGFFQFATALTSNDIDEIQKFLDAAVSSSSEGL
IIKTLNKDATYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAFLLAC
YDSNNEEFQSICKVGTGLTEAMLEERSASLLTKMIPKPKPYYRYSDSLNPDVWFDPSEVW
EVKAADLTISPVHRAAVGIVDANKGISLRFPRLIRVREDKPPEQATSSEQVAELYNAQAI
NHSNNQNDNGDD
NT seq 2199 nt   +upstreamnt  +downstreamnt
atgtcctcccacccctccgccttcgacgtcctcatgtccggcgcccgagcctccgccgcc
aagaaaaagctccagccttcttccctcaagaagcgaaaaaccctagactccactaatcct
atcgaaaaaccccaattgctatctgcgcccgaaagtgccggcacaacccaagacccagaa
tctccgagctgtggcagcagcgaggtagttccggcagggaagaaagtgtgtgtggcggcg
ggtgccgaggagcggacggaggaattgaaaagccgaatgcggctattgaagaagaaaggc
agggaatttgaccctaaattggtggcgaattggggccagggcgagaggattccttttgtg
tttgtttgtttggttttcgatttgattgacaaagagacaggtcggattgtgatcacggat
attgtttgtaacatgttgagaactgtaatgtacaccacgcctgaggatttggtgcctatg
atctatcttgcggccaataggattgcgccagcgcatgagggtttggagcttggaattggc
gacggttcgattattaaggcgcttgcagaggcctgtgggaggactgaagcgcatgtgaag
aagcaatacaaggaaaggggagatctgggtcgtgttgcaaatggaaaccgttcttctcaa
tctacgatgcacaagcctgatgcattaacagtcgccaaggttttcagtacatttcgtcaa
cttgctaaggaatctgggaaggatagtcaggagaggaaaaaaaaccatatcaaggcactt
cttgttgctgctactgaccgtgaacccttatatctgatccgtttgcttcagacaaagttg
cgaattggattggcagagcagactcttttagctgcattgggacaagctgcagtgtatact
gaaaaaaattctacaccacctcctcatattcagagtcctctagaagaggctgcaaaaata
gttaagcaagtgtactctctgcttcctgattacgataaaatcgtccctgcccttttaagt
ggtggcgtgtggaatcttccagagatatgcaactttactttgggtgtcccagttggacct
atgctagcaaaaccaactaaaggggtatctgagattgtacagaagtttcaggatacagaa
tacacatgtgaatacaagtatgatggagaacgtgcccagatacatttcatggaaaatggt
tcggttgagatatacagtcgaaatgctgaaagaaacaccggaaagtaccctgatgttgtt
gttgcagtgtcgaggttaaagaagtcatctgtaacatcatttgttttggattgcgaaatt
gttgcttacgaccgtgaaaaacagaaaattctgcccttccaggtactcagcactagacct
cgtaaaaatgtgagcgtgagtgatatcaaggttgaagtctgcatattttcttttgatatg
ttgtatcttaatggccgaccacttattcaggaacaactgaaagttcgtagagagtgtctg
tatgactcttttgtggaagaagctggattttttcagtttgccacagccttaacatcaaat
gatatagatgaaatacaaaagtttcttgatgctgctgtcagttcaagttccgagggttta
attattaaaacattgaacaaagatgctacctacgagccttcaaagcggtcacttaactgg
ctgaaattgaagaaagattacatggacagtattggggactcactagacttggtacctatt
gctgctttccatggccggggaaaacgtacaggtgtctatggtgcattcctcctcgcttgt
tatgatagcaataatgaagagtttcaaagcatttgtaaagtaggcactggactcaccgaa
gcaatgcttgaagaacgctctgccagtctccttacgaaaatgatacccaaacctaagcca
tattataggtattctgattcattgaatccagatgtatggtttgatccctcagaggtttgg
gaggtgaaagctgcggacctgactattagccccgttcatcgtgctgcagttggcatagtg
gatgctaataagggtatctctctccgctttccacgtctaattcgtgttcgggaagataaa
cctccagagcaagccacatcgtctgaacaggtagccgagttgtataatgctcaagccatc
aaccattcaaacaatcaaaatgacaacggagatgattag

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