KEGG   Malus domestica (apple): 103413296
Entry
103413296         CDS       T03194                                 
Name
(RefSeq) sm-like protein LSM7 isoform X1
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103413296
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103413296
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103413296
   03041 Spliceosome [BR:mdm03041]
    103413296
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103413296
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     103413296
Spliceosome [BR:mdm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    103413296
SSDB
Motif
Pfam: LSM DUF150_C Hfq
Other DBs
NCBI-GeneID: 103413296
NCBI-ProteinID: XP_008349998
UniProt: A0A498JKD8
LinkDB
Position
02:complement(join(37014510..37014599,37016664..37016716,37016839..37016910,37017380..37017461,37017565..37017567))
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDSDDPLKT
TDQTRRLGLIVCRGTAVMLVSPTDGTDEIANPFSQPDGA
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcagggaggaaagaaacagttttggacctggccaagtttgtggacaagggtgtccaa
gtcaagctcaccggcggtagacaagtgacagggactcttaaaggttatgatcagttgtta
aatcttgttctagatgaagcagtggagtttctacgagattctgatgatccgttgaagacc
actgatcagaccaggcgccttggcctcatagtttgtaggggaaccgctgtaatgcttgta
tcgccgacagacggtacagatgagattgcgaaccctttcagccagccagatggtgcctaa

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