Malus domestica (apple): 103415614
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Entry
103415614 CDS
T03194
Name
(RefSeq) RNA polymerase sigma factor SigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103415614
Transcription machinery [BR:
mdm03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
103415614
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
Motif
Other DBs
NCBI-GeneID:
103415614
NCBI-ProteinID:
XP_028950805
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All DBs
Position
15:join(6148813..6148915,6149424..6149581,6149694..6150248,6150343..6150573,6150780..6150920,6151007..6151207,6151515..6151796)
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AA seq
556 aa
AA seq
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MGFGFRLNVLKSGFPLHHSHCQAAASPSKLSFTSVRGREGSFNSARLSFLSIISEEGEIS
GKDTLKVCSFSSASPQILEDGVSEMEQTSFRSSSSNTTGNNQMPVADGNFRSVNTLESCS
AAHFSLLLKNLDALEETFANSDVLKLEKEILLQLGRLGALQLFDACLSRTLTSSSFFYLS
DIPTVPIEEHKIDKKVDNNRGKVIVRSGKKEEKRSRKRALDNARVSSDSLPPKSTLEGFN
HPIVSSAKRASKYRKSRLKIAKNEAEMSTGVKVIANLERIKATLEKETGTVATLSCWAEA
AGVHEKVLLQKLHFGWYCQDELIRSTRSLVLYLARSYRGLGVAMDDLLQAGNQGLLQGAE
RYDHSRGYRFSTYVRYWIKKSMSRLVARHAREIQIPFTLSKAINQITKARKATYNRHMRY
PDDDEIAKITGLSLVRIRSASTCLRVVGSVDDKMWDNSPGTFMECTPDASIKSPEETVTR
QHMKKDIHDLLKCLNSKERQVLVLRYGLNNYDPNSLEEIGKLFDVSKEWIRKIEKKALTK
LRDDETHRSLSHYLKN
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgggttttggttttaggctcaacgtcctcaagtctggctttccacttcatcactctcac
tgtcaagctgctgcttctccttccaagctctcttttacttctgttagaggcagggagggc
tctttcaactcggcaaggctgtcattcctgtccattatctctgaggaaggcgagatttcc
ggtaaagatactctgaaagtgtgctctttttcatctgcttcgccgcagatcttagaggat
ggcgtctcagaaatggaacagacaagctttaggagtagttcgtccaacacgactgggaat
aaccagatgcctgttgcagacggaaactttagatccgttaacaccttagaatcttgcagt
gcagctcattttagtttgttactgaaaaatctcgatgctctggaggagacttttgctaat
tcagatgtgttaaagttggaaaaagagatacttctgcaattaggaaggcttggagctcta
cagttattcgatgcctgtttgtcgagaactcttacatcctcaagctttttttatttgtct
gacatacctactgtaccgattgaagagcataagatagataagaaggtagataacaacaga
ggtaaggttattgtacgttctgggaaaaaggaagaaaaaagatcaagaaaaagagcatta
gataatgccagagtttcttctgactcattgcctcctaaatcaactttggaaggtttcaat
catcctattgtttcatcggcgaaaagagcatcaaagtatcgaaagagtagacttaaaatt
gctaaaaatgaggcagaaatgtcaaccggggttaaggtgattgccaatttggagagaatt
aaagcaactttggaaaaggaaactggcaccgtagctaccttaagttgttgggcggaagca
gcgggagttcacgagaaggtgctgttacagaaattgcattttggttggtactgccaggat
gagcttataaggagcactcgttccttagttctataccttgctagaagctatagagggcta
ggagtagccatggatgatttactgcaggctggaaaccagggtctcctgcaaggtgcagaa
aggtatgatcactcgaggggttaccgattctcaacctatgtccgatactggataaagaaa
tcaatgtcaagattggtggcacggcatgctagggaaatccaaattcctttcacgctaagc
aaggcaataaatcagataacgaaagctcgcaaagccacttacaacagacacatgagatac
ccagatgatgacgaaattgcaaagattacaggtctttcgttggtgagaatcagatcagct
agcacatgtctgagagttgtgggttcggtagatgacaagatgtgggacaactctcctggg
acttttatggaatgtacgccggacgcatcaataaagagccctgaagaaactgtcacaaga
cagcacatgaaaaaagacatccatgatctgctgaaatgcttgaactcgaaggagaggcaa
gtgttggtgctgcgatatgggttaaacaactacgaccccaattcacttgaggagattgga
aagcttttcgatgtgagcaaggaatggatacggaagatagaaaagaaagctctcacgaag
ctaagggacgatgaaacacacagaagtttaagccattacttgaaaaactag
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