Malus domestica (apple): 103418083
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Entry
103418083 CDS
T03194
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03030
DNA replication
mdm03420
Nucleotide excision repair
mdm03430
Mismatch repair
mdm03440
Homologous recombination
mdm03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
103418083
03420 Nucleotide excision repair
103418083
03430 Mismatch repair
103418083
03440 Homologous recombination
103418083
03460 Fanconi anemia pathway
103418083
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mdm03000
]
103418083
03032 DNA replication proteins [BR:
mdm03032
]
103418083
03400 DNA repair and recombination proteins [BR:
mdm03400
]
103418083
Transcription factors [BR:
mdm03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
103418083
DNA replication proteins [BR:
mdm03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
103418083
DNA repair and recombination proteins [BR:
mdm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
103418083
MMR (mismatch excision repair)
103418083
DSBR (double strand breaks repair)
HR (homologous recombination)
103418083
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
DUF936
DacZ_A
Motif
Other DBs
NCBI-GeneID:
103418083
NCBI-ProteinID:
XP_008354455
LinkDB
All DBs
Position
02:complement(join(6573518..6575201,6575817..6576073))
Genome browser
AA seq
646 aa
AA seq
DB search
MPVNLTPNAIAAMIGGDVNLKPLVQVVDIKLIGTQERYRFMVSDGVSCQHAMISSQLNDR
IKTNRVQIGSVVQLTEYISTILQNRQVIVVLNMETIILNSDVIGNPKPYGPPDSAAQNAL
RNGSVQRSAGNHMISQNPVHNVQNLRPTSHSERPSVRPRLHPQSSPHDGPNFRATVQPPY
QPPPHYKNHGPIMKNEAPARIIPINALNPYQGRWAIKARVTAKGDPRRYNNAKGDGKVFS
FDLLDSEGGEIRVTCFNAVLDRFYDIIEVGRVYLISKGSLKPAQKNFNHLKNDWEITLDA
SSTVDLCPDEDGSIPAQNFNFRPISEIENAESNSIVDVIGIVISVNPSVPIMRKNGMETQ
RRILNLKDRSDKSVEVTLWGDFCNREGQKLEEMLASGFSPVLAVKAGKINDFSGKSVGTI
HSTQLFINPDISDARTLRDWFDRGGKDTASVSISKDIVPGGTKNEIRKTVSQIRDEGLGR
SDKPDWVTVKGTISFIKTDSFCYTACPLMIGDRQCNKKVSRSGNSGWQCDRCNQEFEECD
YRYLLQAQIQDHTGLTWATAFQEAGEEILGCSAKALYLLKYEEQDESRFGDIVRSSIFNQ
FLFKLKIKEEMYGDEQRVKITVVKADKVNYSSESRYMLDMISKHSR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgccggtgaacctgacgccgaacgccatcgcggcgatgataggcggcgacgtgaatttg
aagccgttggtgcaggtggtcgatattaagctcatcggcacgcaggagaggtaccgtttc
atggtctccgacggcgtttcgtgccagcatgcaatgatctcttcgcagctcaacgaccga
atcaagaccaaccgagtccagataggctccgtcgtccagctcaccgagtacattagcacc
atcctccagaaccgccaggttattgttgtgctgaacatggaaactatcatactgaactct
gacgtgattgggaatccaaaaccatatggtccacctgattcagctgctcaaaatgcgttg
cgtaatggcagtgttcagcgatcagctggtaatcatatgatttcgcaaaatcctgttcac
aatgtacagaatcttagacctacttctcattctgagaggccaagcgtcagacctcgtctt
catcctcaaagctctccacacgatgggccaaattttcgagctactgttcagcctccttac
caaccacctccacattacaaaaatcatggcccaatcatgaagaacgaggcaccagcacgg
atcattcctattaatgctctgaatccttatcagggaagatgggctatcaaggcaagggtt
acagcaaagggggatccccgtcggtataataatgctaaaggagatggtaaagttttctct
ttcgacctccttgactctgaaggaggggaaatacgagttacctgcttcaatgctgttctt
gaccgcttctatgatattattgaggttggcagagtttacttgatttcaaagggaagcttg
aaacctgcccagaagaatttcaaccatctgaagaatgactgggagataactttggatgca
agttcaaccgtggacctctgccctgatgaagatggttccataccagcgcaaaacttcaac
ttcaggccgattagtgaaattgaaaatgctgaaagtaattctattgttgatgttattggt
attgtgatatctgtcaatccttcagttcctatcatgaggaagaacggtatggaaactcag
agaagaattctgaatctaaaggaccggtcggacaagagcgttgaggtaaccctttggggg
gatttctgcaacagggaaggtcaaaagcttgaagagatgttggcttctgggttttcccca
gttttagccgttaaagctgggaagattaatgatttcagtggcaagtctgttggaacaatt
cattctacacagctatttataaacccagatatttctgatgctcgtaccttgagagactgg
tttgaccgagggggcaaggatactgcttcagtctccatttctaaagacattgttccagga
ggaactaagaatgagatacgcaaaactgtttctcagatcagggacgaaggtctcggaaga
tcagataagccagactgggtcactgtgaaggggacgatttcttttatcaaaacagattct
ttctgttacacagcttgtccgttgatgatcggggataggcagtgcaacaaaaaggtgtcg
aggtcaggaaacagtggatggcaatgtgacagatgcaatcaagaattcgaggagtgcgac
tacagatatctccttcaagcccaaattcaagaccacactggattgacttgggcgacagct
tttcaggaagccggggaagagatcttaggttgctcagcaaaggcgctgtacttgttgaag
tacgaagagcaggatgaatcaagatttggagacatagtccggagcagcatctttaatcag
tttctattcaagcttaaaatcaaagaggagatgtatggcgatgagcagagggtgaagatc
accgtggtgaaggcagataaggtgaactattcttcagaaagccgatacatgctcgatatg
atttcgaagcactctaggtaa
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