KEGG   Malus domestica (apple): 103418729
Entry
103418729         CDS       T03194                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103418729
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103418729
   03009 Ribosome biogenesis [BR:mdm03009]
    103418729
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103418729
Spliceosome [BR:mdm03041]
 Complex A
  U1 snRNP components
   U1 related factors
    103418729
 Complex B
    103418729
Ribosome biogenesis [BR:mdm03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103418729
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2
Other DBs
NCBI-GeneID: 103418729
NCBI-ProteinID: XP_028955396
LinkDB
Position
03:complement(join(3992708..3992881,3993038..3993112,3993212..3993301,3993556..3993630,3993764..3993895,3994383..3994478,3994810..3994908,3995495..3995575,3996211..3996372,3996689..3996763,3996869..3996964,3997071..3997235,3997344..3997436,3997620..3997928))
AA seq 573 aa
MSYVPPHLRSSSRTTTTITTTTTAEASSRTLDDQSKLSYSSSNSHFNYDKSSSGGASFSS
FSHSNASSRWSSGALSQASRARPDSVVPQWKPSDRVLRMNPEMIEEVCLRLNLDVSVSSD
SAPAPAPIESFTDMCLHPSIMKDIDNHGYTTPTSIQAQAMPVALTGRDLLGCAETGSGKT
AAFAIPMIQHCLAQPPVQRGDGPLALVLAPTRELAQQIEKEVKAFSASLESFRTAIVVGG
TNISEQRSELRAGVDVVVATPGRFIDHLQQGNTSITRISFVVLDEADRMLDMGFEPQIRE
VMRNLSEKHQTLLFSATMPEEIEELAQEYLTKPVQVKVGKVSSPTANVTQTLEKVPESEK
TDQLLALLVEEASRVEGTGHPFPLTIVFVERKTRCDEVAEALVAQGLHAVALHGGRTQTE
REAALRDFRKGTTSILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMG
QSTSFYTDRDMFLVANIKKAISDAGSGNAVAFATGKTARRKEKEAAAAEKQARVASKSSI
VGPTSVNIEDKYRFMFADSNNKKEGAADSAWDD
NT seq 1722 nt   +upstreamnt  +downstreamnt
atgtcgtatgtgcctccgcacctgaggtcgagctcaagaaccaccacgacaatcaccacc
accaccactgccgaagcctcgtctcgaaccctagacgatcagagcaagctctcctactcc
tcctccaactctcacttcaactacgacaagtcgtcgtccggtggtgcttccttctccagc
ttctctcactccaatgcctcctctcgctggagctccggcgctctctcccaggccagcaga
gctcgcccggattccgtcgtccctcagtggaagccctccgaccgcgtcctccgcatgaat
cctgaaatgattgaagaggtttgtttgcggcttaatttggatgtttctgttagttccgac
tctgctcctgctccggcaccgatcgagtcttttacagatatgtgtttgcaccctagcatc
atgaaggatatcgacaatcacggatacaccacaccgacatccattcaggctcaagctatg
ccggttgctctcactgggagggacttattaggttgtgctgaaactggcagtggaaaaact
gctgcattcgccattcccatgatacagcattgcttggctcaacctcctgttcagcgcggt
gatggaccgctagctctggtattggctccgactagagagcttgcccaacaaattgaaaaa
gaggtcaaagcgtttagtgcatctctcgagtccttcagaactgcaattgtggtgggtgga
accaacatatctgagcagaggtctgagctacgagcaggagttgatgtagtggttgctact
cctggaagatttatagatcatttacaacaagggaacacttctatcactagaatttcgttt
gttgttttagatgaagctgatagaatgcttgacatgggatttgaaccacagataagagag
gtgatgcggaacctttctgaaaagcatcaaactttgctgtttagtgcaaccatgcctgaa
gagatcgaagaattagctcaggaatacttgactaaaccagtgcaagtgaaggtgggaaaa
gtgagtagccctacagcaaatgtgactcagactttggagaaggttcctgagagtgagaag
actgatcagctattggctttgctcgtagaagaggcatctcgggttgaaggaactggccat
ccctttcccttaacgattgtgtttgttgaaaggaagacgagatgtgacgaagttgctgaa
gctttggtagcacaagggttgcatgcagttgctcttcatggtggtcgtacacaaactgaa
agagaggctgctctacgtgattttagaaaaggcactaccagtattttggttgccactgat
gttgcgtctcgcggtttggatgtctcaggagttgcacatgttatcaatttggatcttcca
aagagcatggaagattatgtacaccggattggaaggacgggaagagcaggatcaatggga
caatctacgtccttttacacagatcgtgatatgttcctcgtggcaaatataaagaaagcg
atatcagatgctggatctgggaatgctgtggctttcgcaactgggaagactgcaagaagg
aaagaaaaagaagcagcagctgctgaaaagcaagctagggttgcttccaaaagctcaata
gtaggaccaacatcagtaaacattgaggacaagtatcggttcatgtttgcggattcgaac
aataaaaaagaaggggcagcagatagtgcttgggacgattga

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