KEGG   Malus domestica (apple): 103419093
Entry
103419093         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11-like isoform X1
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103419093
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103419093
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103419093
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     103419093
  mRNA degradation factors
   3'-5' decay
    Ski complex
     103419093
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Ski2_N Helicase_C DEXQc_Suv3 ResIII AAA_22 PhoU
Other DBs
NCBI-GeneID: 103419093
NCBI-ProteinID: XP_008355438
LinkDB
Position
03:join(6552846..6552980,6553169..6553426,6553654..6553914,6554000..6554068,6554230..6554314,6554865..6555043,6555169..6555276,6555920..6556021,6556112..6556312,6556457..6556567,6557676..6557743,6557959..6558349,6558823..6558978,6559057..6559167,6559394..6559447,6560071..6560328,6561020..6561129,6561693..6561846,6562908..6563367,6563833..6564047,6564160..6564398,6564756..6564882,6564959..6565171)
AA seq 1354 aa
MDPVEAANGLSFRVGFSGHSGHLRLEPLSTVESSDPVKSLPDFILPPAFPRETPESIKEY
IEEKYLSPRLDDEVFAPEKVGRQWDFDWFDKANVPLEPTLPRCVVVPTWELPFRRQKSGS
AECQWEPKSVEVDVSELIVGAQESGSLPRLAGPAKDFVRGSINNRPFRPGGLDDSQSLER
VLPDGASNGEWVRELLVGGSPQAVPPSFKQGMDLGDLKAYPCSWNVYKDQSSLESTSDEK
LSLQSGLSVQFDDLFKKAWEEDVVEFEGDGQLSGSESVKSEDEAKEVDVAIDTSEPELSL
LDEILSVAAGESKSRSNGIGEDGEQNPKKAWAISGGTEYIAENFHDLVPDKALDFPFELD
KFQKEAIYYLEKGDSVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRD
LCGKFDVGLLTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVER
GVVWEEVIIMLPRHINIVLLSATVPNKVEFADWIGQTKQKQIRVTGTTKRPVPLEHCLFY
SGELYKICESEIFIPQGFKAAKDAFKKKNMSATTGGSGSQAPASASHDGTRSQKQSSNWG
GKQKKQSGSQNSGNFSRTGGANQNNGNGMNSWGLRRSDASLWLSLINKLSKMSLLPVVVF
CFSKIRCDKSADSMYGTDLTSSSEKSEIRVFCDKAFSRLKGSDRTLPQVVRVQSLLHRGI
GVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNAPARTVVFDTLRKFDGKEFRQL
FPGEYTQMAGRAGRRGLDKIGTVIVMCRDEILEEGDLKNVIVGSATKLESQFRLTYIMIL
HLLRVEELKVEDMLKRSFAEFHAQKKLPEHQRLLMRKLAQPTKTIECVKCETAIEEYYDM
YSEAAKYSKEILEAVMQSPIAKQFLTTGRVVVMGSHSAQDHLLGVVVKAPSANNKQYIVL
VLKPELLPQTPLGSGNLQDSKNTDFPQGYFVVPKSKRALDEEYRSGVTPRKASGVIKIKL
PHQGSAAGVSFEVKEVDSKDFLCICNCKIKIDQVGLLEDNSNAAYSKTVQQLLDTKSDRN
EYPPALDPYKDLNLRDVNLVGTYYKWINLLQKMATNKCHGCIKLDEHIKLAREIKRHSEE
VDALKFEMSDEALKQMPDFQGRIDVLKEIGCIDADLVVQIKGRVACEMNSGEELISTECL
FENQLDDLEPEEAVALMSAFVFQQRKTSDPSLTPKLSQAKQRLYDTAIRLGQLQAHYNVQ
INPEEYARENLKFGLVEVVYEWAKGTPFADICELTDVPEGMIVRTIVRLDETCREFKNAA
SIMGNSALYKKMETASNAIKRDIVFAASLYVTGV
NT seq 4065 nt   +upstreamnt  +downstreamnt
atggatcccgtagaagccgcgaacgggctctcgttccgggtcgggttctccggccacagt
ggccacctccggctcgagcccctctccactgtcgagagctccgaccccgtcaagtctctc
cctgatttcattctgccgcctgcatttcctagggagacgcccgaatcaataaaagagtat
atagaggagaagtatctttcgccaagattggacgacgaagtatttgcacccgaaaaagtt
gggaggcagtgggatttcgactggtttgataaggcaaatgtacccttggagccaacactg
ccgcgctgcgttgtggttcccacgtgggaattgccgtttcggcgccagaagagtgggtcg
gccgaatgtcaatgggaacctaaatccgtggaggtggatgtctcagaacttatagtagga
gctcaagagtctggttcattgccacgtttggctggaccagcgaaggattttgtacgggga
agcatcaacaaccgcccttttcgtccgggaggcttggatgattcccaatctctagaaaga
gttcttcctgatggtgcttctaatggcgaatgggtacgcgaacttcttgttggtggctct
cctcaggctgtacctccaagctttaagcaaggaatggaccttggtgatctgaaggcctat
ccatgctcgtggaatgtatataaggatcaaagttccctggagagcacatcagatgaaaaa
ctgtctttgcagagtgggttgtctgtacagtttgatgacctgttcaagaaagcttgggaa
gaggatgttgttgaatttgaaggagatggtcaattgtcaggatcagaatctgttaagtca
gaggatgaagcaaaggaggttgatgttgccatcgatacttctgagcctgaattgtctttg
ttggatgagattttgtcagttgcggcaggagaatcaaagtcaagatctaatggaattggt
gaagatggtgaacaaaatccgaagaaggcttgggctattagtggaggtactgaatatatt
gcagagaactttcatgatcttgttcccgacaaagcacttgattttccgtttgaattggac
aaattccagaaggaggctatttattatcttgaaaagggggactcagtatttgtggctgct
cacacatcagctggaaagacagttgttgcagaatatgcatttgctttagcatcaaaacat
tgtaccagagctgtgtatactgctcctatcaaaaccatcagcaatcaaaaatatagagat
ttgtgtggaaaatttgatgttggacttctcactggtgatgttagcttgaggccagaggct
tcttgtcttattatgaccaccgaaatattaaggtcaatgctttatcgtggtgctgacata
atacgtgatattgaatgggttatctttgatgaagtgcactatgtcaatgatgttgaaaga
ggtgttgtttgggaagaagttattataatgctaccaagacacatcaatattgttctcctt
tcagctacggtaccaaacaaagttgagtttgctgactggattggacagacaaagcaaaag
caaattcgtgttactgggactacaaaaagaccagttccattggagcactgtctattttac
tccggagaactttacaaaatatgtgaaagcgaaatcttcattccccaggggttcaaagct
gcaaaagatgcatttaagaaaaagaatatgagtgccactactggtggtagtggatcacag
gcaccagcttcagcttctcatgatgggactcgatctcaaaaacaaagttcaaactggggc
ggaaaacagaagaagcaatctggttcccaaaattcagggaatttctcccgaactggagga
gcaaatcaaaacaatggaaatggcatgaacagttggggtttaagaagatcagatgcttct
ttgtggttgtcacttattaacaagctctcaaagatgtcactattacctgtggttgtattt
tgtttctcaaagattcgctgtgataagtcagctgatagtatgtatgggactgaccttaca
agtagttctgagaaaagtgagattcgtgttttctgtgacaaagcattttcgcgcctaaag
ggatctgacaggactttaccacaggttgtcagagttcaaagccttctccatagaggaatt
ggcgtccatcatgctggactacttccaattgttaaggaagtagtggaaatgcttttttgt
cgcggagtgatcaaggttttgttctcaacagagacatttgcaatgggggttaatgcacca
gctagaacggttgtttttgatacgttaaggaaatttgatggcaaggaatttagacaatta
tttccaggagaatacactcaaatggcaggccgtgcaggcagaagaggacttgataaaatt
ggtacagttattgtaatgtgccgtgatgaaatcctagaagagggtgatttgaagaatgtc
atagttggaagtgcaaccaagcttgaatctcagtttcggcttacctatatcatgatcctg
catctccttcgtgttgaggaactgaaggtggaggacatgctgaaaagaagttttgctgag
ttccatgctcagaagaaactaccagaacatcagcgacttctgatgcgaaagcttgctcag
cctacaaaaactattgaatgtgtaaaatgtgaaacagctattgaggagtattatgacatg
tactcagaagctgcgaagtatagcaaggaaatattggaggccgttatgcagtctcctatt
gccaaacaatttcttacaactgggagagtggtagtcatgggatcacactcagcacaggac
cacttgcttggagtcgttgtgaaagcacctagtgctaataataaacagtacatcgttttg
gtgctgaaacctgaattattgccccagactccactgggtagtggtaacttgcaagacagt
aaaaacacagattttccacaaggttattttgtggtaccaaaatctaaacgtgctcttgat
gaagagtatcgttctggtgtcacacctcggaaagcatcgggtgtcatcaagataaaatta
ccacaccagggttctgctgctggggtgagctttgaggttaaagaagttgacagcaaagat
tttctatgcatatgcaattgcaagataaaaattgaccaagttgggcttcttgaagacaat
agcaatgctgcttactccaagacagttcaacagctgttggacacaaaatctgacagaaat
gagtaccctccagccttggatccgtataaagatctgaatttgagagacgtaaatcttgtc
ggaacatactataagtggattaacttattgcaaaagatggcaacgaacaagtgccatggg
tgtataaagttggacgagcacattaagttagcaagagagataaagagacacagtgaggaa
gtcgatgctcttaagtttgaaatgtcagatgaagcacttaaacaaatgccagactttcaa
ggccggatagatgttctgaaggaaattggatgtatagatgctgatcttgtggttcaaata
aaaggccgtgttgcatgcgaaatgaattctggggaggagttgatatccacagagtgtttg
tttgaaaaccaactggatgacctggaaccagaagaagcagtggcgttgatgtctgccttt
gtgtttcagcagaggaagacttcagatccttctcttactccaaaactgtctcaggccaaa
cagaggttgtacgatacagcaataagacttggccagcttcaagcccactacaatgttcaa
ataaatccagaggagtatgctcgagagaatctcaagtttggtcttgttgaagtagtttat
gagtgggcaaagggcactccgttcgcagacatttgcgaacttacagatgttccagaaggc
atgatagttcgaaccattgtcagacttgatgagacgtgccgtgagttcaaaaatgctgca
tctattatgggtaattctgctctgtacaagaaaatggaaacagcttcaaatgcgataaag
cgtgacattgtatttgccgctagcttatacgtcaccggagtctaa

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