Malus domestica (apple): 103420526
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Entry
103420526 CDS
T03194
Name
(RefSeq) uncharacterized protein isoform X1
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103420526
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103420526
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103420526
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
103420526
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
103420526
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUFIP1
Motif
Other DBs
NCBI-GeneID:
103420526
NCBI-ProteinID:
XP_028961082
LinkDB
All DBs
Position
07:join(5038462..5038542,5038700..5039281,5040069..5040178,5040262..5040338,5040538..5040607,5042162..5042252,5042333..5042395,5042964..5043587)
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AA seq
565 aa
AA seq
DB search
MLPHYNSFPRHSNQAHTTGSLAPPPHQMQPQLGIRNPQIPVQFSNSNSMIALPNFMNLPN
NLLPMQNNHLGMPQFGSIGPTSQPGQPNVGFFGSQGMPQFCNLVQQVNQLMSSQVPGQIF
GHNMLNLQQQMNQNMGLPYGQFCLPNSMQNMNQFVPMQMQNPPQVRPNYGFPVSNQAPQT
TMSQNVPLFANNRANLHSNQAGQQVNQNQQNLGLPPVQGTQLVQENKTNSSGGYNSNSNW
KQSPSKSFTKNPKNHQGGFQNPQAHHMKNAKGKFSFPNGHKGKGLRNESEGKFSLANSSN
QGRERKRSLFLSYTEQEIERWREERRKHYPSKSNIEKKISEKLINSEVIEREVNIRREQL
KDILTKQAELGVQIAEVPSHYLADSNQGHIKEDNETLTKKGRSSNKFGKREKYDRKDRFS
KRQRSHQRDSSSDPSFDKREPNKREPTLLQKLLSADIRRDRSHLLQVFRFMVTNSFFKDC
PDKPLKFPTVAVKESSCDEEVAQKLSSLVEKDAFKGSDKSMVGRVYNNHSGNNNDVGNSV
DSSDEDDGEGEGTERPGEEEEEIID
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
atgttacctcactacaattcgtttcctcgccattcaaaccaagctcacacaactggtagc
ttggctccacctcctcaccagatgcaacctcaattgggtatcaggaatccccaaattcca
gtccaatttagtaattccaattccatgatagctctacccaatttcatgaatctaccaaac
aaccttcttcctatgcaaaataaccatctgggtatgcctcaattcggttccattggccct
acatctcaaccgggtcagccgaatgttgggtttttcggttcgcaaggtatgcctcaattc
tgcaatttggtgcagcaagtgaatcaattgatgtcatctcaagtgcctgggcaaatattt
gggcataacatgttaaatttacagcaacagatgaaccagaatatgggtttgccgtatgga
caattttgtttgcccaattcaatgcaaaacatgaatcaatttgtgccaatgcaaatgcaa
aatccaccacaagtccgtcctaattatggttttccggtatcaaatcaagcacctcagacc
acaatgtctcaaaatgtcccattgtttgcaaataaccgggctaatctgcattctaatcag
gcaggccagcaagttaaccaaaatcagcaaaacttgggtctacccccagtgcaagggaca
cagcttgtgcaggaaaataaaacaaatagtagtggtggttacaattcaaattccaattgg
aaacaatcaccaagcaaaagctttacaaagaatccgaagaatcaccaaggcggatttcag
aatcctcaggcgcatcatatgaaaaatgcaaagggaaagttctcttttcctaatgggcac
aagggaaaagggttaagaaatgagagtgaaggaaagttttctctggccaactcttcaaac
cagggcagggaaaggaagagatctcttttcttgtcatatacggaacaagagattgagagg
tggcgggaagaacgtaggaagcactacccatcgaaatccaacatagagaagaagataagt
gaaaagctgataaattcagaggtcattgaaagagaggtcaacattcgacgagagcaactc
aaggatattcttacaaagcaggctgagttgggagttcaaattgccgaagtaccatcgcac
tacctcgcagattcaaatcaagggcatataaaagaagataatgaaacattgaccaagaag
gggaggtcatcaaacaagtttggtaagagagaaaaatatgatagaaaggatcggttttcc
aagaggcaaagatcacatcaaagggattcgtctagtgacccttcttttgacaaaagggag
ccaaacaaaagggagccaaccttgctgcagaagcttcttagtgcagatattaggagagac
agaagccacctgctgcaggtgtttaggttcatggttacaaactctttcttcaaagattgt
ccagacaaacctttgaaattccctactgtagcggtaaaagaaagttcgtgtgacgaagag
gtggctcaaaagttgtcctcacttgtagagaaagatgcttttaagggaagtgataaatcc
atggttggaagagtttataacaatcattctggaaataacaacgatgtcgggaattctgtt
gatagcagtgatgaagatgatggtgaaggagagggaacagagagacctggggaagaagag
gaagaaatcatagactag
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