Malus domestica (apple): 103420806
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Entry
103420806 CDS
T03194
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm04120
Ubiquitin mediated proteolysis
mdm04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103420806
04120 Ubiquitin mediated proteolysis
103420806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mdm04121
]
103420806
Enzymes [BR:
mdm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103420806
Ubiquitin system [BR:
mdm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103420806
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-RING_16
zf-ANAPC11
zf-RING_11
zf-RING_5
zf_RING_Vps8
Prok-RING_4
Motif
Other DBs
NCBI-GeneID:
103420806
NCBI-ProteinID:
XP_070681653
LinkDB
All DBs
Position
07:complement(join(36636609..36636767,36636857..36637124,36637313..36637451,36637766..36637971,36638058..36638207,36638495..36638671,36639050..36639582))
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AA seq
543 aa
AA seq
DB search
MMKLQTYGGVSLVATLAIVYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTMWQL
TKKLFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFLAMVTALLLIKALHWLA
QKRVEYIETTPSVPMLSHVRIVSFLGFLLVLDSLFLYSSISNLIRTQKASVSLFFSFEYM
ILATTTVSTFVKYVFYVTDMLMEGQWEKKPVYTFYLELIRDLLHLSLYLCFFLVIFTYYG
VPLHLIRELYETFRNFKIRIADYIRYRKLTSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLLCGHLFHVACLRSWLERQHTCPTCRALVVPPDSGTGTAGHRGSQSDVHQQGTGTT
AQGGGVAGDNVSQHEARLRAAAAAASIYEKSYVYPSANRLVWSPGYTAIPQVQRHTADSS
NTESGGESSIGQSQPQLAAQGGAANLSFSQFPPYMFVPGANLAYGERLGSDPNLTASPLE
AQKKLLQHRIEILQNQLQVLQKPKPKESVDMGPTMASLDGKGKSIAASSSVSDCGRHEDR
VDS
NT seq
1632 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcaaacctatggcggggttagtttggtagcaaccctagcgattgtttat
catgcatttagcagtagaggccagttttatccggcaatggtgtatttgtcgacgtcgaag
atcagcttggtgttgcttctcaacatgggtctggttattatgtgtactatgtggcaattg
actaaaaagctcttccttggatcactccgggaagccgaggttgagaggcttaatgagcag
tcgtggcgggaagtcatggaaatcctctttgccatcactattttcaggcaggacttttcg
gtctcatttcttgctatggttacagctctgttgttaatcaaggctttgcattggttggct
cagaagagggttgagtacatcgagactactccgtccgtgcccatgctgtctcatgttcgg
attgtctcctttttgggtttcttgcttgttctagatagtctctttttgtacagttctatt
agcaacttgataaggacacaaaaggcctcggtttccctctttttttcgttcgagtacatg
atactagcaacaacaacagtgtcaacatttgtgaaatatgttttctatgttactgacatg
cttatggagggacaatgggagaagaagcctgtctacacgttctacttggaacttattcgg
gacttgcttcacttgtctctgtatttgtgcttcttcctcgtgattttcacgtactatggt
gtgccattgcacttgatacgtgagctctatgaaacatttaggaactttaagattcgcatt
gctgattatattcgttatcgaaagctcacatcaaacatgaatgatcgattcccagatgct
acgcctgaagaacttaatgcaagtgatgcaacttgtatcatttgccgtgaagagatgaca
acagccaagaaactattatgtggacacctttttcatgtcgcttgcctacgatcatggtta
gagcgacagcatacctgccctacttgcagagccctagttgtacctcctgacagtgggaca
ggtacagctggacataggggttcacagtcagatgttcatcaacaggggacaggcacaacg
gctcagggtggtggagttgcgggtgataatgtgagccaacatgaagccaggctccgagct
gctgctgctgctgcatcaatatatgagaagtcttatgtatatccttctgcaaacagacta
gtatggtctcctggatatacggcgattcctcaggttcaaagacatacggctgactcctct
aatactgaatctggtggagaatcttctattggacaatcacagccacaacttgcagcccaa
ggtggagctgcaaacttgtccttctctcagtttccaccttacatgtttgtccccggagcc
aacttggcctatggggagaggttgggcagcgatccaaatctgacagcttctccgctggag
gcccagaaaaagcttcttcagcaccggattgagatcctgcagaatcagcttcaagtttta
cagaaaccaaaaccaaaggaaagtgtggacatgggcccaacaatggcatctttggatggc
aaaggaaagagtatcgcggcttcttcatctgtttcggactgtggacgtcatgaagatcgg
gtcgattcgtag
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