KEGG   Malus domestica (apple): 103420991
Entry
103420991         CDS       T03194                                 
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like
  KO
K04354  serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
mdm  Malus domestica (apple)
Pathway
mdm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    103420991
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:mdm01009]
    103420991
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103420991
   03036 Chromosome and associated proteins [BR:mdm03036]
    103420991
Protein phosphatases and associated proteins [BR:mdm01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-2 (PP2A)
    Regulatory subunits
     103420991
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Protein phosphatase 2A
     103420991
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Centromeric chromatin formation proteins
   Other centromeric chromatin formation proteins
    PP2A (protein phosphatase 2A)
     103420991
SSDB
Motif
Pfam: WD40 WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_EML_2
Other DBs
NCBI-GeneID: 103420991
NCBI-ProteinID: XP_028962529
LinkDB
Position
08:join(3185551..3185671,3186512..3186615,3186748..3186846,3186970..3187089,3189160..3189251,3189629..3189747,3190102..3190225,3190386..3190509,3191175..3191243,3191355..3191446,3191550..3191627,3191770..3191980)
AA seq 450 aa
MNGGGEGLAALATSGVAVSPLEWKFSKVFGERTAGEEVQEVDIISAIEFDRTGDHLATGD
RGGRVVLFERTDIKDHGGHRRDLERMDYSISGHPEFRYKTEFQSHKIEFDYLKSLEIEEK
INKIRWCQTANGALCLLSTSSKTIKYWKVAGQETSLVARCRRLYANAHDYHINSISNNSG
GETFLSADDLRINLWNLEISNQSFNIVDMKPGNMEDLTEVITSAEFHPTHCNMLAYSSSI
GSIRLIDLRQSALCDTHSKLFEEQEAPGSRSFFTEIVASISDMKFAKNGRHILSRDYMTL
KLWDINMDSGPVATFQVHEHLRPKLCDLYENDSIFDKFECCLSGDGHRVATGSYSNLFRV
FGCSEGSTEATTLEASKNPLRRQVQSSGNLRRVIRRGMFFHHNIKGADNSGADANGNPFD
FTTKLLHLAWHPSEDLIACAASSSLYMYYA
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgaacggcggcggagagggcctcgcggctctggcgacgtcaggggtggccgtatcgcct
ctcgagtggaagttttcgaaggtcttcggagaaaggaccgccggcgaagaagttcaggaa
gttgatataatatccgctattgaatttgatagaacgggggaccaccttgccactggagat
cgtggaggccgggtggttttatttgaaagaactgatataaaggatcatggtggacaccgg
agagatctggagaggatggattattcaatcagtgggcatcctgagttccgctataaaact
gaattccagagtcataaaatcgagtttgattatcttaagagcttggaaattgaggaaaaa
atcaacaagatcagatggtgtcaaacagctaacggtgcactgtgtctcctctccactagt
agcaaaaccatcaaatactggaaggtggccggtcaagagacgagccttgtggctagatgt
cgaagactctatgccaatgctcatgactatcatattaattcgatttcaaataacagcggt
ggtgaaacttttttatcagctgatgaccttcgaattaatctttggaacctagagattagc
aatcaaagttttaatattgttgacatgaagccgggaaacatggaggatctaactgaggtg
ataacatccgcagaatttcaccctactcattgtaacatgttggcatacagtagctcaata
ggctcaattcgtcttatcgatctgcggcagtcagctttatgtgacactcatagcaaattg
tttgaagaacaagaagcgcccggctcaagatcttttttcactgaaatagtagcatcaatt
tcagatatgaagtttgctaagaatggaaggcatatactaagtcgggattacatgactctt
aagttatgggacatcaacatggattctggcccagttgccactttccaggttcatgaacat
ctaagaccaaagctctgtgatttatacgaaaatgattctatcttcgataagtttgagtgc
tgtctaagtggagatggacaccgagtggcaacaggttcttacagcaatctgtttcgagtg
tttggttgttctgaagggagcacagaagcaacaacattggaggccagcaaaaaccccctg
aggagacaagttcaatcttcgggcaaccttcgtcgtgttatcaggcgaggtatgttcttc
catcataacataaaaggtgcggataactctggagctgatgcaaacggaaatccttttgac
ttcacaacaaagttgctacatcttgcatggcacccttctgaggatttaatcgcctgtgct
gcttcaagcagcctatacatgtattatgcgtaa

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