KEGG   Malus domestica (apple): 103421011
Entry
103421011         CDS       T03194                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 2-like
  KO
K16252  DNA-directed RNA polymerase IV and V subunit 2 [EC:2.7.7.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    103421011
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:mdm03021]
    103421011
Enzymes [BR:mdm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     103421011
Transcription machinery [BR:mdm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     103421011
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_7 RNA_pol_Rpb2_4 RNA_pol_Rpb2_3 RNA_pol_Rpb2_2 RNA_pol_Rpb2_5 CFAP77
Other DBs
NCBI-GeneID: 103421011
NCBI-ProteinID: XP_008357267
LinkDB
Position
08:complement(join(4275063..4275564,4276081..4276352,4276458..4277408,4278091..4278382,4278786..4279681,4279913..4280125,4280494..4280979))
AA seq 1203 aa
MGASSDAKGDIGMSSKGESFTNGVDMDIDDSDYDDEYDYSTSLQDLGEGFLKNFCKEAAT
SFFNEYGLISHQINSYNDFIQNGIQRVFSSFGEIIVEPGYDPSKKGDNEWRYALVKFGKV
TLGRPSFWGGSDNDKEYNMLPRHARLQNMTYCAKMKVNITVEVYNQRLVSSDKFKTGKER
FLDKEILSTDTRDITIGSVPVMVKSDLCWMRDVEKGDCDFDHGGYFIIKGAEKTFIAQEQ
SCLKKLLITNNQGLTVAYRSEVKRHRLIIRLVGISKLENIEGVEKVLTVYFMSTEIPVWV
WFFALGVSSDKEVIDLIDYGSEDASILNILFASIRDADKATEKVDGGFRRGKNALKYVDD
VIKKTAFPPGESMEECISLYLFPNLRGLKQKARFLGYMVKSLLQASAGRRKCDNRDDFRN
KRLDLAGELLERELKAHIGHARRRMAKALQRDLYGDRVVRPIEHYLDASIVTNGISRAFS
TGAWCHPFKKMERMSGVVATVGRANPLQTMIDMRKTRQQVQYTGKVGDARYPHPSHWGKV
CFLSTPDGENCGLVKNLATTTIVSTNILESLLPELSLCGMEKLVDDTSTSLQGKFKVFLN
GDWVGVCEDSLSFVSELRRMRRRKKLPPQVEIKRDEKQGEVRVYSDAGRILRPLLVVENL
NKIKALKGEKHPFKYLLNKGIIELIGAEEEEDCSTAWGIKYLFMEEKGKSAVKYTHCELD
MSFLLGLSCSIIPFANHDHARRVLYQAQKHSSQAIGFSTTNPNLRVDTLSHQLHYPQRSL
FQTMTSDCLGKPGHQLGKNRVLPKPELYNGQNAIVAVNVHLGFNQEDSIVMNRASLERGM
FRSEHIRSYKAEVDNKHSLEKRRKPDDCVNFGKMQSKFGRVDNLDEDGFPYVGANLQSGD
IIIGRCSESGADHSIKLKHTERGMVQKVVLSSNDDGKNFAVVSMRQVRSPCLGDKFSSMH
GQKGVLGFLESQENFPFTVQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIASGGSKKYA
TPFSTLSVDDIAEQLHRAGFSRCGKERVYNGGTGKMARSLIFMGPTFYQRLIHMSEDKVK
FRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLHERLFTLSDSSQVYICQ
KCEHVANVIQRSVEGGRKIRGPYCRNCNSADDLVKANVPYGAKLLCQELFSMGISLKFET
RFA
NT seq 3612 nt   +upstreamnt  +downstreamnt
atgggggcatcatcggatgccaagggagatatcggtatgagcagcaagggagaaagtttt
acaaatggtgttgacatggacatcgacgatagtgattatgatgatgagtatgattactca
actagcttgcaagatcttggggaaggatttctgaagaatttctgtaaggaggcggcaaca
tcattcttcaacgagtatggcctcattagtcatcaaatcaactcatataatgacttcata
caaaatggcatacaaagagtcttcagttcttttggcgagattatagtggagcctggctat
gacccgtcaaagaagggagacaatgaatggcgctatgctttagtgaagtttgggaaggtt
actcttggtaggccaagtttttggggtggttctgacaatgataaggaatataatatgttg
cctaggcatgctcgacttcagaacatgacatactgcgctaagatgaaagtgaatatcact
gttgaggtatataatcaacgacttgtcagcagcgataagtttaagactggaaaagaacgg
ttccttgacaaggaaattttaagtacggataccagagacattacgattggtagtgtccct
gtaatggtgaagtctgatttatgctggatgagggacgttgagaaaggtgactgtgatttt
gaccatggaggctattttattatcaagggtgcagagaagacatttattgcacaagaacag
agctgtctgaagaaacttctcattacaaataatcagggtctgacagtagcatataggtca
gaggtgaagaggcataggttaataattagactagttgggatttctaaacttgaaaacatt
gaaggagtagagaaagtccttaccgtttacttcatgtcgacagaaatccctgtgtgggta
tggttttttgcccttggtgtttcatcggataaagaagttattgatctgattgattatggc
agtgaagatgccagcattttgaacatactttttgcctcaattcgcgatgccgataaagct
actgaaaaagtggatggaggcttccgtagggggaagaatgccctcaaatatgtggatgat
gtgataaagaaaactgcatttccacctggggaaagcatggaagagtgcatcagcttgtat
cttttccccaatctcagaggtctaaagcaaaaggctcgctttcttgggtatatggtgaag
tccctgttacaagcctctgctggtcgcaggaaatgtgacaatagggatgattttaggaac
aagaggttggacttggcgggtgagcttctcgaacgagagcttaaggcgcatattggacat
gcaaggcggcgcatggcaaaggccttgcagagagacctttatggtgatcgggttgtgcgt
ccaattgaacactacctagatgcctccatagttactaatggcatttcaagagcattctca
actggagcatggtgtcatcccttcaagaaaatggagaggatgtctggtgtagtggcaaca
gttgggcgagcaaatccgctgcagacaatgattgatatgcggaagacaaggcagcaggtt
caatatacagggaaggttggagatgccagatacccgcatccttcccactggggcaaagta
tgttttctctcaactccggatggtgagaattgtgggcttgtaaaaaatttggctaccact
acaatagtaagtacaaatatattggagtctctactacctgaattgtcactctgtggaatg
gaaaaattggtggatgatacttctacctcactgcaagggaagttcaaagtttttctgaat
ggggattgggttggagtttgtgaagattccctctcatttgtctcagaactcaggaggatg
cgacgtaggaaaaagttgccacctcaggtggaaatcaaaagagatgaaaagcaaggagaa
gtacgagtatattctgatgctggaaggatcctacgccctctcttggtggttgagaatttg
aacaagataaaagcattgaaaggggaaaagcatccattcaagtatttgcttaacaaagga
ataatcgagcttattggagctgaagaagaggaagactgtagtactgcatggggcattaaa
tatctgttcatggaagaaaagggaaaatcagctgtaaagtacacacattgtgagctggac
atgtcattcctgttgggtttgagctgtagcattatcccatttgcgaatcatgaccatgca
aggagggtcctctaccaagcacagaagcactcgtcgcaggctattgggttttctaccaca
aatcctaaccttcgagtggatacactgtctcaccaactgcactacccccagaggtcactt
tttcagacaatgacgtctgactgccttggcaaaccaggacaccaactgggtaaaaacaga
gttttgccgaagcccgaattgtacaatggtcagaacgcgattgtggcagtcaatgttcac
ttggggttcaaccaagaagatagcatagtaatgaatcgggcatcactggaacgtggtatg
ttccgatctgaacatatcagaagttacaaggctgaggttgacaacaagcactccctggag
aaaaggcggaagcctgatgattgtgtcaattttggcaagatgcagagcaagtttggtcgg
gttgacaatctcgatgaagacggctttccctacgttggtgcaaacttgcagagtggtgat
atcatcattgggaggtgcagtgaatcaggagctgatcatagcatcaaactgaagcacacc
gaaaggggaatggttcagaaggttgtgctttcttctaatgatgatggaaagaactttgct
gttgtttctatgagacaggttcgctcaccgtgtcttggagacaagttctccagcatgcat
gggcaaaagggtgttctaggttttctggagtctcaagagaacttccctttcacagtacag
gggatagttccagatattgtgataaatccccatgcatttccgtcaagacaaactcctggt
caactcttagaagctgctttaggaaagggaatcgcctctggtggttcaaagaaatatgcc
accccgttctctactctctctgtcgatgacatcgcagaacaactgcatagggctggattt
tcaagatgcggaaaagagagagtatacaatggtggaaccggtaaaatggctcgttccctc
atattcatgggcccaaccttttaccagcgcctgattcacatgtctgaagacaaagtaaag
ttcaggaacaccgggccagtccaccctctcacccgtcaaccagtggcagatcggaagcga
tttggagggatcaagtttggagaaatggaacgtgactgcctaatagcccacggagcttct
gcaaacttacatgagcgccttttcactctcagcgactcctcccaggtgtatatctgccag
aaatgcgaacatgtagctaatgtgatccaacgctcagttgaaggtggacgcaagatcagg
ggtccttactgccggaattgcaattctgcagatgatcttgtcaaggcaaacgtcccgtac
ggagcgaagttactgtgccaggagctgttcagcatgggcatcagtttgaagttcgagact
cggttcgcttag

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