Malus domestica (apple): 103421495
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Entry
103421495 CDS
T03194
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm00040
Pentose and glucuronate interconversions
mdm01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
103421495
Enzymes [BR:
mdm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
103421495
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Gene cluster
GFIT
Motif
Pfam:
Pec_lyase_N
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
103421495
NCBI-ProteinID:
XP_008357758
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Position
09:join(3017008..3017234,3017621..3018305,3018403..3018645,3018741..3018965)
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AA seq
459 aa
AA seq
DB search
MVLGPMASKLNLVLFMISFCMLVPSLKAETANDTLNIANFDAVWQERAMKAQKAALKAYQ
PNPEQVTEDFNESVEQTVVEEDLEDDQSAGNSTRRNLRGKHYKGPCKATNPIDRCWRCRA
NWANNRKKLASCVKGFGRKTRGGKKGAYYIVTDSSDDNVHDPKPGTLRHAVIQTQPLWII
FARSMVIRLSQELIVTSHKTIDARGANVHIAHGAGITLQFVQNVIIHGLRIHDTVPGSGG
MIRDSLSHIGIRTQSDGDGISIYGSSNIWLDHLSMWNCADGLIDAIQGSTAITISNCHFT
HHNDVMLFGASDAFAGDAIMQITVAFNHFGKGLIQRMPRCRWGFVHVVNNDYTHWIMYAI
GGSSHPTIISQGNRFIAPPNQAAKEVTKRDYAPESVWKSWQWRSEGDLMMNGAFFVQSGV
PNKKHGFGKLDMIKAKPGTFVRRLTRFAGSLNCKVGKKC
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggttcttggaccaatggcatcgaagctcaatttggtcctctttatgatttctttctgc
atgctggttccaagcttgaaggctgagacagcaaatgacaccctcaacattgctaacttc
gatgccgtatggcaggaacgagccatgaaagctcagaaggcagccctcaaggcctaccaa
cccaacccggaacaagtcaccgaggacttcaacgaaagcgttgaacagaccgtcgttgag
gaggaccttgaagatgatcagtctgccggtaacagcacaaggaggaatctgagaggaaaa
cattacaagggcccttgcaaggccacaaacccgatcgaccgctgctggcggtgccgggcc
aactgggctaacaaccgcaagaagctggccagctgcgtgaaaggctttggccgcaagacg
cgcggaggcaagaaaggggcttactacattgtcaccgactcttcggacgacaatgtccat
gaccctaagcccggaaccctacggcacgccgtgatccaaacgcaaccgttgtggatcata
tttgcacgcagcatggtcatcaggctgagccaagagctcatagtaacgagccacaagaca
attgacgcacgaggggcaaatgtgcacattgctcatggcgcagggatcacactccagttc
gttcagaacgtgattattcatggcctccgcatccacgacaccgtaccaggcagcggtggt
atgatcagggactccctgagtcacatcgggattcgcacacagagtgacggagatggtatc
tccatttacgggtcgtctaacatttggctcgaccatctttctatgtggaattgcgcggat
gggctcatcgacgccattcaagggtctactgctattaccatatccaactgccacttcacc
catcacaacgacgtgatgcttttcggggctagcgatgcgtttgcaggggatgcaatcatg
caaataacggttgcgtttaaccatttcggcaagggattgatacagagaatgccaagatgc
agatggggatttgtccatgtcgtgaacaatgactacacacattggatcatgtatgccatc
ggaggaagctctcaccccacaattatcagccagggcaaccgattcatcgccccaccaaac
caggctgcaaaagaagtgacgaagagagactatgcaccggagagcgtgtggaagagctgg
caatggagatcagaaggagatcttatgatgaatggagcattctttgttcagtctggagtg
ccgaacaagaagcatggatttggcaagttagacatgatcaaagcaaaaccaggcacattc
gtcagaaggctcacacgctttgcaggttctctcaactgcaaggttggcaagaagtgctag
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