KEGG T03194: 103421615

Malus domestica (apple): 103421615

Entry

103421615         CDS       T03194

Name

(RefSeq) probable NOT transcription complex subunit VIP2 isoform X1

K12605

CCR4-NOT transcription complex subunit 2

Organism

mdm Malus domestica (apple)

Pathway

mdm03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:mdm00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103421615
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103421615
Messenger RNA biogenesis [BR:mdm03019]
Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     103421615
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     103421615

SSDB

Motif

Pfam:

NOT2_3_5_C

Other DBs

NCBI-GeneID:

103421615

NCBI-ProteinID:

XP_070674362

LinkDB

Position

03:complement(join(8914065..8914124,8914215..8914359,8914617..8914658,8914741..8914793,8914887..8915312,8915708..8915893,8915999..8916090,8917540..8917641,8917719..8917925,8918613..8918994,8919157..8919335,8919406..8919511,8920116..8920133))

AA seq 665 aa
MSGLLNSSLNGSASNIPDNSGRFASSFSGQSGAASPVFHHSGSIQGLHNIHGSFSVPNMP
GTLTSRSSTLNNVPSGGVQQPTGSLSGGRFTSNNLPVALSQLSHGSSHGHSGITNRGGIS
VVGNPGFSSSTNGIGGSIPGILPTSAAIGNRNAVSGLGVSPILGNAGPRITSSMGNMVGG
GNIGRSISSGGGLSVPGLASRLNLSANSGSGSLTVQGQNRLMSGVLPQGSPQVISMLGNS
YPNPGGPLAQSHVQVNNLSSMGIMNDLNSNDSSPFDINDFPSLTSRPSSAGGPQGQLGSL
RKQGLGVSPIVQQNQEFSIQNEDFPALPGFKAGGNAEYGIDMHQKEQLHDNAVSMMQSQH
FSMGRSSGFNLGGSYSSHRPQQQQQHAPSVSSSGVSFSQVNNQDFLHMHGSDIFPSSHST
YHSQTSGGPPGIGLRPLNSANSVSGMGSYDQLIQQYQQQNQSQFRLQQMSAGNQSFRDQG
MKSMQSAQSAPDLFGLLGLLSVIRMSDPDLTSLALGIDLTTLGLNLNSTENLHKTFGSPW
SDEPAKGDPEFGVPQCYYTKQPPVLHQGYFSKFSVETLFYIFYSMPKDEAQLYAAYELNN
RGWFYHKEHRLWFIRVPNMEPLVKTNAYEKGSYHCFDPNTFETIRKDNFVVHYELLEKRP
TLPQH

NT seq 1998 nt +upstreamnt +downstreamnt
atgtcgggtttacttaattcttctctaaacggatcagcctcaaatattccagacaatagt
gggcgatttgcgtcatctttctctggtcaatctggtgcagcttctcctgtttttcatcac
tcaggaagtattcagggattgcataacattcatgggagcttcagtgttcccaatatgcca
ggtactttaacatcaagaagttcaacattaaataatgttccttccggtggagtacaacaa
ccaactggaagcctctctggcggacgattcacatcaaataaccttcctgttgctttgtct
cagttatctcatggaagctcccatggacattcaggaatcactaatagaggaggtataagt
gtagtaggaaaccctggatttagtagtagcacaaatggaattggcggttctattcctggg
attctccctacatctgctgcaattggtaaccggaatgctgtttcagggttgggcgtgtcc
ccaattttgggaaatgcaggtcctcggattacaagttccatgggaaacatggttggtggg
ggcaacattgggaggagtattagctctggtggaggtttgtcagtgcctggtcttgcttct
cgtctaaatttaagtgcaaatagtggatctggaagcttaactgtccaagggcaaaatcgc
ttgatgagtggtgtgctaccacaaggttctccgcaagtaatttcgatgcttggaaattct
tatcctaatcctggaggtccacttgctcaaagccatgtccaagtgaataacttgagctct
atgggaataatgaatgatttgaattctaatgacagttctccttttgacatcaatgatttc
ccttcattaacaagtcgtcctagttctgcgggagggccccaggggcaattgggttcacta
cgaaaacaaggccttggcgttagtcctattgttcaacagaaccaagagttcagcatccaa
aatgaggactttccagctttaccaggatttaaagcaggtggtaatgctgaatatgggatt
gatatgcaccagaaagaacaactccatgacaatgctgtgtcaatgatgcaatctcagcac
ttctcaatgggaaggtcctcaggatttaacttggggggttcttattcttctcataggcca
caacaacagcaacaacatgctccatcagtcagcagtagtggtgtctcgttttcacaagta
aacaatcaggattttctccatatgcatggttcagacatattcccatcatcacattcaaca
tatcattcacagactagtggaggacctcctggcattggattaagacctctgaattctgcc
aattcagtttctggtatgggttcatatgaccagcttattcagcagtatcaacaacaaaat
caatcccagtttcgcctgcaacagatgtcagctggaaatcaatcatttagggatcaggga
atgaaatcaatgcagtcagcgcaatccgctccagacctatttggtttgcttggattgtta
agtgtcataaggatgagcgatcctgatcttacatcgcttgcacttggaattgatttgaca
acactgggattaaacttgaattcaacagaaaatcttcacaagacttttggttccccgtgg
tctgacgagccagctaagggtgatccagagtttggtgttcctcaatgttactatactaaa
caaccgcctgtactacatcaagggtatttttcaaagttttctgtggaaacgttgttctat
atcttttacagcatgcccaaagacgaagcccaattatatgctgcctatgaacttaataat
agaggctggttttatcacaaggagcaccgtctatggttcataagggtaccgaacatggag
ccacttgtgaagaccaacgcgtacgagaaaggatcttatcactgctttgatcccaataca
tttgaaacaatccgaaaggataattttgtggtgcattatgagttgttggagaagagaccg
acgttaccacagcattga

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