Malus domestica (apple): 103422403
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Entry
103422403 CDS
T03194
Name
(RefSeq) uncharacterized protein
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103422403
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103422403
03041 Spliceosome [BR:
mdm03041
]
103422403
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
103422403
Spliceosome [BR:
mdm03041
]
Complex B
Other components
Prp19-related factors
103422403
Complex C
103422403
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_15
Mad3_BUB1_I
TPR_19
NRDE-2
Motif
Other DBs
NCBI-GeneID:
103422403
NCBI-ProteinID:
XP_008358690
LinkDB
All DBs
Position
10:complement(join(40592161..40592610,40592771..40593223,40593889..40594059,40594137..40594321,40594974..40596477))
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AA seq
920 aa
AA seq
DB search
MAISQELYPSQDDLLYEEELLRNPFSLKLWWRYLIARAESPFKKRFIIYERALKALPGSY
KLWYAYLRERLELVRNLPITHSQYETLINTFERALVTMHKMPRIWIMYLQTLTEQKLVTK
TRRTFDRALCALPVTQHDRIWVPYLMFVSQKGIPIETSLRVYRRYLKYDPTHIEDFIEFL
INSSLWQEAAERLASVLNDDKFYSIKGKTKHRLWLELCDLLTKHATEVSGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRNLHEKARDIFEEGMTTVVTVRDFSVIFDSYAHFEEIVL
AHKMETADLSDDEEDEENGVAEDRNEEEEDLRLDINLSVAELEKKMLDGFWLHDDKDVDL
RLARLDHLMDRRPILANSVLLRQNPHNVEQWHRRVKLYEGNPTKQILTYTEAVRTIDPMK
AVGKPHTLWVAFAKLYENHNDIVNARVIFDKAVQVNYKTVDNLASLWCEWAEMELRHKNF
KGALELMRRATAEPSVEVKRRVAADGNAPVQMKLHKCLRIWAFYVDLEESLGKLESTRAV
YERILDLKIATPQIIINYASLLEEHKYFEDAFKVYQKGTKIFKYPHVKDIWITYLSKFVK
RYGKKELERARELFEEAVQAAPADAKKPLYLQYAKLEEDYGLSKRAMKVYDEATKAVPNH
EKLGMYEIYIARATEIFGVPKTREIYQQAIDSGLPDKDVKTMCLKFAELEKSLGEIDRAR
AVYTYASQFSDPRSDVDFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYM
MQKDQKLYIDEAKDQLKQAGVPEDEMAALERQLAPVANDTTTKDSSRIGFVSAGAIQQTD
GGIKVTTNPEDIELPEENDSEDDERVEIQIAQKEVPDAVFGELANKRKEAEKDEGGDADT
KDNDSRLGALERIKRLKRGA
NT seq
2763 nt
NT seq
+upstream
nt +downstream
nt
atggcgatttctcaggagttgtacccatcgcaagacgacctcctctacgaagaggagctt
ctccggaaccccttcagcctgaagctatggtggcgctacctaatcgctcgagccgaatct
ccgttcaaaaagcgcttcataatctacgagcgagccctcaaggctctgcccggaagctac
aagctctggtacgcttacctccgcgaacggctcgagctcgttcggaacttgcccatcact
cactcgcagtacgaaaccctaattaacacgtttgaacgagctctggtgacgatgcacaag
atgcccaggatttggattatgtacttgcagactctgacggagcagaaattggtcaccaag
acccgccggaccttcgacagagcgctgtgtgcacttcctgtgacgcagcacgaccgcatt
tgggtgccctacctgatgtttgtgagccaaaagggcatcccaatcgagacctcgcttcgg
gtttatcgcaggtatttgaaatatgaccctacccatattgaagatttcatcgagttcttg
attaattctagtctttggcaagaggctgccgagaggcttgcttcggtgttgaatgatgat
aagttttactcaataaaggggaaaacgaaacataggctgtggttggaattgtgtgatttg
cttactaagcatgccactgaggtttcaggcctcaatgtagacgctataattagaggtggg
attaggaagtttacggacgaggtggggcggttgtggacctctcttgcggactattacatt
aggaggaatttgcacgagaaggcgagggatatattcgaggaaggtatgactactgtggta
acggtgagagattttagtgtgatttttgattcgtatgctcattttgaagagattgtgctt
gctcataagatggaaactgctgatttgagtgatgatgaggaggacgaagaaaatggggtg
gcagaggatagaaatgaggaggaagaagatcttcgattggacattaacttgtctgtggct
gagcttgagaagaaaatgcttgatgggttttggctacatgatgataaggatgtagatttg
agattagctcgattggaccatctcatggatagaagacctatactggcaaatagtgttctt
ttgcgacaaaatcctcataatgtagagcagtggcaccggagagtgaagctatacgagggc
aatcccacaaagcagatacttacatacactgaggctgtgaggacaattgatccaatgaaa
gcagttgggaagcctcacacattgtgggttgcttttgctaagttgtatgagaaccacaat
gatattgtcaatgccagagtgatttttgataaagcagtgcaggtgaattacaagaccgtg
gataatttggctagtctttggtgtgagtgggcagaaatggaactgaggcataagaatttc
aaaggagcactggaactgatgaggcgggctactgcagagccatctgttgaggtgaaacga
agagtggctgctgatgggaatgcgccagttcagatgaagctgcataaatgcttgagaatt
tgggcattttatgtagacttggaggagagcctgggcaaattagagtccactcgagctgtt
tacgagaggatattggatttgaaaatagctacaccgcagatcataatcaattatgcatcg
cttcttgaggagcataaatactttgaagatgcattcaaggtttatcaaaaaggtactaag
atattcaagtatccacatgtcaaagacatatggattacatatctttccaaatttgtaaag
agatatgggaagaaagaactggaacgcgcaagagagctatttgaggaggctgttcaagcg
gctcctgccgatgcgaagaaacctttgtatcttcaatatgcaaagctggaggaggattat
ggtctatcaaagcgggcaatgaaggtctatgatgaagcaactaaggctgttccaaaccat
gagaaactgggcatgtatgaaatctacattgctcgtgctacagagatatttggcgtcccg
aagacgagggaaatataccagcaggccatagactctggtcttccagacaaagatgtgaag
acaatgtgtttaaagtttgctgagcttgagaagagtttgggagaaatcgatcgtgcacgg
gcagtgtatacatatgcttcacagttttcagatccacgatctgatgtggacttctggaac
aaatggcatgagtttgaggtccaacacggaaatgaagatacatttcgagagatgcttcga
attaaacgaagtgtttctgcaagctatagccagacccactttattctacccgagtatatg
atgcaaaaggatcagaagctgtacatagacgaggcaaaagaccagctgaaacaggctgga
gtccccgaagatgaaatggctgctctagagaggcagttggcacctgtggccaacgatact
accactaaagatagcagtagaataggctttgtgagtgcaggagcaattcagcagactgac
ggagggatcaaagttactacaaatcctgaagacattgagctaccagaagaaaacgattca
gaagacgacgaaagggttgaaattcaaattgcacagaaggaggtcccggatgctgttttt
ggagagttggctaacaagagaaaggaggccgaaaaagatgagggcggagatgctgatacc
aaggacaatgacagccgccttggtgcccttgagagaataaaaaggctaaaacgaggtgcc
tga
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integrated database retrieval system
