KEGG   Malus domestica (apple): 103422642
Entry
103422642         CDS       T03194                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103422642
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103422642
   03009 Ribosome biogenesis [BR:mdm03009]
    103422642
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103422642
Spliceosome [BR:mdm03041]
 Complex A
  U1 snRNP components
   U1 related factors
    103422642
 Complex B
    103422642
Ribosome biogenesis [BR:mdm03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103422642
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 AAA_22 DUF3439
Other DBs
NCBI-GeneID: 103422642
NCBI-ProteinID: XP_008358920
LinkDB
Position
11:complement(join(4341119..4341295,4341457..4341531,4341630..4341719,4342019..4342093,4342229..4342360,4342755..4342850,4343139..4343237,4343791..4343871,4344004..4344165,4344531..4344605,4344716..4344811,4344917..4345081,4345190..4345282,4345459..4345758))
AA seq 571 aa
MSYVPPHLRSSSRTTTTTTTTTTAKPSFRTLDDQSKLSSSNSHINNDKSSGGASFSSFSH
SNASSRGSSGAVSQASRARPDSVVPQWKPSDRVLGMKPEMIEEVCLRLNLDVSASPDSAP
APAPIESFTDMCLHPSIMKDIDNHGYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAF
AIPMIQHCLAQPPVQRGDGPLALVLAPTRELAQQIEKEVKAFSASLESFRTAIVVGGTNI
SEQRSELRAGVDVVVATPGRFIDHLQQRNTSLTRISFVVLDEADRMLDMGFEPQIREVMR
NLSEKHQTLLFSATMPEEIEELAQEYLTKPVQVKVGKVSSPTANVTQTLEKVPESEKTDR
LLALLVEEASRVEGTGHPFPLTIVFVERKTRCDEVAEALVAQGLHAVALHGGRTQTEREA
ALRDFRKGTTSILVATDVASRGLDVSGVAHVINLDLPKSMEDYVHRIGRTGRAGSMGQST
SFYTDRDMFLVANIKKAISDAGSGNAVAFATGKTARRKEKEAAAAQKQARVALSNSSTAG
PASVNIEDKYRFMFADSNNKKEGAADSAWDD
NT seq 1716 nt   +upstreamnt  +downstreamnt
atgtcgtacgtgcctccgcacctgaggtcgagctcacgaaccaccacaaccaccaccacc
accaccaccgccaaaccctcgttccgaaccctagacgatcagagcaagctctcctcctca
aactctcacatcaacaacgataagtcgtccggtggtgcttccttctccagcttctcgcac
tccaatgcctcctcccgcgggagctccggcgctgtctcccaggccagcagagctcgccct
gactccgtcgtccctcaatggaagccctccgaccgcgtcctcggcatgaagcctgaaatg
attgaagaggtttgtttgcggcttaatttggatgtttctgctagtcccgactctgctcct
gctccggcaccgattgagtctttcacagatatgtgtttgcaccctagcatcatgaaggat
atcgacaatcacggatacactacaccgacatccattcaggctcaagctatgccggttgcc
ctcagtgggagggacctattaggttgtgctgaaactggcagtggaaaaactgctgcattc
gccattcccatgatacagcattgcttggctcaacctcctgttcagcgcggtgatggacca
ctagctctggtattggctccgactagagagcttgcccaacaaattgaaaaagaggtcaaa
gcttttagtgcatctctcgagtccttcagaactgcaattgtggtcggtggaaccaacata
tctgagcagaggtctgagctacgagcaggagttgatgtagtggttgccactcctggacgg
tttatagatcatttacaacaaaggaacacttctctcactagaatttcttttgttgttcta
gatgaagctgatagaatgcttgacatgggatttgaaccgcagataagagaggtgatgcgg
aacctttctgaaaagcatcaaactttgctgttcagtgcaactatgcctgaagagattgaa
gaattagctcaggaatacttaactaaaccagtgcaagtgaaggtgggaaaagtgagtagc
cctacagcaaacgtaactcagactttggagaaggttcctgagagtgagaagactgatcgg
cttttggctttgctcgtagaggaggcatctcgggttgaaggaactggccatccctttccc
ttaactattgtatttgttgaaaggaagacgagatgtgatgaagttgctgaagctttggta
gcacaagggttgcatgcagttgctcttcatggtggtcgtactcaaactgaaagagaggct
gctctacgtgattttagaaaaggcactaccagtattttggtcgcgactgatgttgcatct
cgcggtttggatgtctcaggagttgcacatgttatcaatttggatcttccaaagagcatg
gaagattatgtgcaccggattggaagaacgggaagagcaggatcaatgggacaatctact
tccttttacactgatcgtgatatgttcctcgtggcaaatataaagaaagcaatatcagat
gctggatctgggaatgctgtggcttttgcaactgggaagactgcaagaaggaaagagaaa
gaagcagcggctgctcaaaagcaagctagggttgccttatccaatagctcaacagcggga
ccagcatcagtaaacatcgaggataagtatcggttcatgtttgctgattcgaacaataaa
aaagaaggtgcagcagatagtgcttgggacgattga

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