KEGG   Malus domestica (apple): 103422738
Entry
103422738         CDS       T03194                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103422738
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103422738
   03009 Ribosome biogenesis [BR:mdm03009]
    103422738
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103422738
Spliceosome [BR:mdm03041]
 Complex A
  U1 snRNP components
   U1 related factors
    103422738
 Complex B
    103422738
Ribosome biogenesis [BR:mdm03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    103422738
SSDB
Motif
Pfam: DEAD Helicase_C NOA36
Other DBs
NCBI-GeneID: 103422738
NCBI-ProteinID: XP_028943816
LinkDB
Position
11:complement(join(3164635..3164762,3164856..3165096,3165219..3165311,3165440..3165486,3166378..3166605,3166960..3167195,3167270..3167355,3167559..3167651,3167903..3168057,3168239..3168397,3168514..3168693,3168818..3169146,3169297..3169334))
AA seq 670 aa
MATRSDDRRTKRSGLDAFGGGATGGCRRSARLAQHYVVAAAAQGSSNTAGEGKEYRSQRR
KITAQGGPSETQGHHKREITTDGTSYTPDDLVEEYRLRRGIRVVGWDDAPNPIRTFDHTR
LPENVIQEFSKAGFVRPTPIQAQVWPMDLEDRDLIGIAQPGSGKMLAYLIPAILHANSQP
KRSRGGDGPIVLILAPNTQRAEQIHQECAKFAAAYNIKVLFGLSLLKPENCGQTCGGGIL
IYTLGGLLLSLKRKRTNLKSVTYLVLDGADWMLSDTHEPQIRNLLSEIREDCQKSFWGSS
WPEDVDKRAKLFLHNPCKVQIISPDLKVTPPVDQIVYVLTEDQKYNKLVALLDGILDGSR
VVIFMDTKKGCESQDHIALQLCTDGLHAVSFHENKSQAERVSIASEFQAGKIPIMIATDV
AAHVLDLKDVKYVINYDFPGSLDDYVYRIDRFGSAAAEGTAYTFFTTANAGCAKGLTILL
KKAGQNVSSELEQLGRDVTYPGTYIPPLRRWVPNNKMTGPGHFSPMYLPSPRPEIHARYA
LEEIRKVKGLQAHFVRVVEAYQFTTLCFFARMAYLTFEAADPTTYEKKLYQAIVVEASDK
KETMLFGLVNSDGRLSKMHDTREGFEYPIYSIWLEDDEEDEDDEDDENNEDDDDDEDDDD
DEDNEEDDDE
NT seq 2013 nt   +upstreamnt  +downstreamnt
atggcgacgcgctccgatgaccgtcggacaaaaagaagcgggttggacgcttttggtggt
ggtgctacgggaggctgtcgtcgctcggcacggttagcacagcattatgttgttgctgct
gccgctcaaggctcctcaaatactgccggcgagggcaaggagtataggagccagcggagg
aaaattaccgctcaaggcggcccgtctgaaacgcagggccaccacaagagggaaattact
actgatggcacctcttacacgcccgacgacctcgtcgaggagtataggctacggagggga
atccgtgttgtaggctgggatgatgctccaaaccccatcagaacttttgatcacactcgg
cttccggaaaatgttatacaagaattttcaaaagctggatttgttagacctacaccaatt
caagctcaagtatggccaatggatttggaggaccgtgacctcattggtattgctcaacca
ggatccgggaagatgctagcgtatctgatccctgcaattctccatgcaaactcacagcca
aaacgatctcgtggtggagatggcccaatagtattgattttagctccaaacactcaacgc
gctgaacaaatccatcaagagtgtgctaaatttgctgctgcttacaacattaaagtctta
ttcggcttgtccctgcttaagcctgaaaattgtggtcagacttgtggaggtgggatttta
atctacacacttggtggcttgcttctttcgttaaagagaaaacgtacaaacttgaaaagc
gtcacataccttgtgttggatggtgctgattggatgctatcagacacgcatgagcctcaa
atacgaaatctattatctgagattcgtgaagactgtcaaaaatcattctggggtagtagc
tggccagaagatgttgataaacgggcaaaactattccttcacaacccatgcaaagttcaa
ataatttctccagatctgaaagtgacacctccggtggaccaaattgtttacgtccttact
gaggatcagaaatataacaagttggttgcgctgctagatggtatattggatggcagcaga
gtagtgatattcatggatacaaagaaaggatgtgaatcacaagatcacatcgctctgcag
ctttgcacggacggtctgcacgcagtctcgtttcatgaaaacaaaagtcaagcggaaagg
gtcagtattgcctctgagtttcaagctggcaagatccccataatgattgcaacagatgta
gccgctcatgttctagatctgaaggatgtgaaatatgttatcaattacgactttccagga
tcccttgatgattatgtttaccgcattgaccgttttggaagtgctgcagcagaaggaaca
gcatacacattctttacaactgctaatgctggatgcgcaaagggacttaccatcttactc
aagaaagctggacagaatgttagttctgaattggaacaactggggcgtgatgtaacatat
ccaggaacctacatacctccgttgcggcgctgggtgcctaacaacaaaatgactggacct
ggtcatttctctccaatgtatctgccttctccgaggcctgaaatacatgcccgttatgcc
ctggaggaaatcagaaaagtaaaggggctccaagcgcattttgtgagagtggtggaggca
taccaattcactaccttgtgtttttttgctagaatggcttatctaacttttgaggcagct
gaccccacgacttatgaaaagaagctttaccaagcaatagttgttgaggcgagtgacaaa
aaggaaacgatgttgtttggtctggtcaattctgatggccgtttgtcaaaaatgcatgac
actagagagggattcgaatatccaatctatagtatctggctagaagacgatgaagaggat
gaagatgatgaagacgatgagaacaatgaagacgatgatgacgatgaagacgatgatgac
gatgaagacaatgaagaagacgacgatgaatga

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