Malus domestica (apple): 103423076
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Entry
103423076 CDS
T03194
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
mdm
Malus domestica (apple)
Pathway
mdm03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
103423076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103423076
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
103423076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
103423076
NCBI-ProteinID:
XP_008359369
LinkDB
All DBs
Position
03:complement(join(10927228..10927320,10927699..10927848,10928839..10928927,10929647..10929767,10929864..10929966,10930107..10930185,10930769..10930910))
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AA seq
258 aa
AA seq
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MAGKGGATSSTYAPSPTTQKTKSLIFGNNDVDWVRSDGREFHQCRPAFFKTGAVNCASGS
AYAEFGNTKVIVSVFGPRESKKAMMYSDIGRLNCDVSYTTFATPVRGQGSDHKEFSSMLH
KALEGAIILDTFPKTTVDVFALVLESGGSDFPVIISCASLALADAGIMMYDLVASVSVSC
LGKNLVIDPVLEEESYQDGSLMLTCMPSRYEVTQLTITGEWSTPKLNEGMQICLDACAKL
AEIMRACLKGTNSTLEES
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atggccgggaaaggtggagcaacctcaagcacttacgcgccgtctccgacgacccagaag
accaaatctctaatttttggaaacaacgacgtcgattgggtccgctccgacggccgtgaa
ttccaccaatgccgacctgcctttttcaagactggtgctgtaaattgtgcttcaggatca
gcttatgcagagtttggaaataccaaggtcattgtttctgtatttggaccaagagagagt
aagaaggcaatgatgtacagtgatataggacgcttaaattgtgatgttagctatacaact
tttgctactccagttcgtggacaggggtcggaccacaaagaattttcttctatgcttcat
aaagctttagagggtgcaataatattggacactttcccgaagactactgtggatgttttt
gcattggtgttagaatctgggggcagtgattttcctgtaatcatatcatgtgctagcctt
gccctagcagatgccgggataatgatgtatgaccttgttgcttcagtttctgtgtcttgt
ctcggaaagaaccttgtcattgatcctgttttggaggaggaaagctaccaagatggaagc
ttaatgctgacttgtatgccttctcgctatgaggtcacccaactaactatcactggggaa
tggtcaaccccaaaacttaacgagggaatgcaaatttgcctggacgcgtgcgcaaagctt
gcggagatcatgagggcatgcttgaaggggactaattcgaccttggaagaatcatga
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