KEGG   Malus domestica (apple): 103423359
Entry
103423359         CDS       T03194                                 
Name
(RefSeq) DNA ligase 1-like
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03410  Base excision repair
mdm03420  Nucleotide excision repair
mdm03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103423359
   03410 Base excision repair
    103423359
   03420 Nucleotide excision repair
    103423359
   03430 Mismatch repair
    103423359
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103423359
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103423359
Enzymes [BR:mdm01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     103423359
    6.5.1.6  DNA ligase (ATP or NAD+)
     103423359
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     103423359
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    103423359
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     103423359
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     103423359
   NER (nucleotide excision repair)
    Other NER factors
     103423359
   MMR (mismatch excision repair)
    Other MMR factors
     103423359
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-GeneID: 103423359
NCBI-ProteinID: XP_070675088
LinkDB
Position
03:complement(join(11775464..11775532,11775605..11775682,11775798..11775875,11777347..11777403,11777489..11777562,11777666..11777737,11778001..11778062,11778150..11778251,11778547..11778659,11779624..11779755,11780287..11780374,11781281..11781375,11781495..11781725,11782021..11782137,11782218..11782319,11783018..11783134,11783508..11784311))
AA seq 796 aa
MLSRSLCSCHCLLLPSLRRLHSPISLFRPKPSSLPLISLLPQNPNLRAMSSRPSAFDALM
SGARAAAAKKKPQPSPSKKRKALDSTDPIKKPQLLPTPESACATQDPESVEVKAPESKEI
KEAQESSGNGGEVVPAGKKVCVAAGAKERTEELKSRMPLLKKKAGEFDPKLVANWGQGER
VPFVFVCLVFDLIDKETGRIVITDIVCNMLRTVMYTTPEDLVPVIYLAANRIAPAHEGLE
LGIGDASIVKALAEACGRTEAHVKKQYKELGDLGHVAKESRSSQSMMRKPDALTVTKVFS
TFRLLAKESGKDSQEKKKNHIKALLVAATDCEPLYLIRLLQTKLRIGLAEQTLLTALGQA
AVYTEKHSTPPSHIQSPLEEAAKIVKQVYSLLPDYDKIIPALLSGGVWKLPEICNFTLGV
PVGPMLAKPTKGVSEIVQKFQDTEYTCEYKYDGERAQIHFMENGSVEIYSRNAERNTGKY
PDVVAAVSRLKKSSVTSFVLDCEIVAYDREKQKILPFQVLSTRARKNVSVSEIKVEVCIF
AFDMLYLNGRPLIQEQLKVRRECLYDSFVEEAGFFQFATALTSNDIDEIQKFLDAAVSSS
SEGLIIKTLTKDATYEPSKRSLNWLKLKKDYMDSIGDSLDLVPIAAFHGRGKRTGVYGAF
LLACYDSNNEEFQSICKVGTGLTEAMLEERSASLRTKVIPKPKSYYRYHDTMNPDVWFEP
SEVWEVKAADLTISPVHRAAVGIVDANKGISLRFPRLIRVREDKPPEQATSSEQVAELYN
AQAINHSNNQNDNEDD
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgctctcacgatcactctgttcatgccattgtctacttctcccctctctccgccgtctc
cacagccccatctccctcttccgccctaaaccctcttctcttcctctcatttccctctta
ccccaaaaccctaatcttcgcgccatgtcctcccgcccctccgccttcgacgccctcatg
tctggtgcccgcgccgccgccgccaagaaaaagccccagccttctccctccaagaagcgc
aaagccctagactccactgaccctatcaaaaaaccccaattgctgcctacgcccgaaagc
gcctgcgcaacccaagacccagaatccgtggaagtcaaagctccggaatccaaggaaatt
aaagaagctcaagaaagttctggcaatggcggtgaggtggttccggcagggaagaaagtg
tgcgtggcggcgggtgctaaggagcggactgaggaattgaagagccgaatgccgctactg
aagaagaaagccggggaatttgacccaaaattggtggcgaattggggccagggcgagagg
gttccttttgtgtttgtttgtttagttttcgatttgattgacaaagagacgggtcggatt
gtgatcacggatattgtttgtaacatgttgaggactgtaatgtacaccacgcctgaggat
ttggtgcctgtgatttatcttgcggcgaataggattgctcctgcgcatgaaggtttggag
cttggaattggggatgcttcgattgttaaggcccttgcagaggcttgtgggaggactgaa
gcgcatgtgaagaagcaatacaaggagctgggagatcttggtcatgttgcaaaggaaagc
cgttcttctcaatctatgatgcgcaagcctgatgcattaactgtcaccaaggtttttagt
acatttcgtctactagctaaggaatctgggaaggatagtcaggagaagaaaaagaaccat
atcaaggcacttcttgttgctgccactgactgtgaacctctatatctgatccgtttgctt
cagacaaagttgcgaattggattggcagagcagactctattaactgcattgggacaagct
gcagtgtatactgaaaaacattcgacaccaccttctcatattcagagtcctctagaagag
gcagcaaagattgttaagcaagtgtactctctgcttcctgattacgataaaatcatccct
gcccttttaagtggaggtgtatggaagcttccagagatatgcaactttactttgggcgtc
ccagttgggcctatgctagcaaaaccaactaaaggggtatctgagattgtacagaagttt
caggatacagaatacacgtgtgaatacaagtacgatggagaacgtgcccagatacatttc
atggagaatggttctgttgagatatacagtcgaaatgctgaacgaaacactggaaagtat
cctgatgtggttgctgcagtgtcgaggttaaagaagtcatctgtaacatcattcgttttg
gattgtgaaattgttgcttatgaccgtgaaaaacaaaaaattctgcccttccaggtactc
agcactagagcgcgtaaaaatgtgagcgtgagtgagatcaaggttgaagtctgcatattt
gcttttgatatgttgtaccttaatggccgaccacttattcaggaacaactgaaagttcgt
agagagtgtctgtatgactcttttgtggaagaagctgggttttttcagtttgccacagcc
ttaacatcaaatgatattgatgaaatacaaaagtttcttgatgctgctgtcagttcgagt
tctgagggtttaattattaaaacattgaccaaagatgctacttatgagccttcaaagcgg
tcacttaactggctgaaattgaagaaagattacatggacagtattggggactcactagac
ttggtacctattgctgctttccatggccggggaaaacgtacaggtgtctatggtgctttc
ctcctcgcttgttatgatagcaataatgaagagtttcaaagcatttgtaaagtaggcact
ggactcactgaagcaatgcttgaagaacgttctgccagtctccgtactaaagtgataccc
aaacctaagtcatactataggtatcatgatacaatgaatccagatgtatggtttgaaccc
tcagaggtttgggaggtgaaagctgcggacctgactattagccccgttcatcgtgctgca
gttggcatagtggatgctaataagggtatttctctccggtttccacgtcttattcgagtt
cgggaagacaaacctccggagcaagccacatcatctgagcaggtagccgagttgtataat
gctcaagcgatcaaccattcaaacaatcaaaatgacaacgaagatgattag

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