KEGG   Malus domestica (apple): 103424172
Entry
103424172         CDS       T03194                                 
Name
(RefSeq) LOW QUALITY PROTEIN: histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03082  ATP-dependent chromatin remodeling
mdm03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    103424172
   03083 Polycomb repressive complex
    103424172
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:mdm03036]
    103424172
Enzymes [BR:mdm01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     103424172
Chromosome and associated proteins [BR:mdm03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     103424172
   HDAC complexes
    Sin3A-HDAC complex
     103424172
    BRAF-HDAC complex
     103424172
    REST complex
     103424172
    SHIP complex
     103424172
    MiDAC complex
     103424172
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     103424172
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    103424172
  Chromatin remodeling factors
   NuRD complex
    103424172
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 103424172
NCBI-ProteinID: XP_070675112
LinkDB
Position
03:join(13695820..13695856,13696005..13696117,13696224..13696341,13697960..13698034,13698112..13698341,13699204..13699338,13699429..13699537,13699715..13699764,13699848..13699938,13701216..13701286,13705412..13705516,13706320..13706386,13711472..13711557)
AA seq 428 aa
MRLKDKIAYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADHVEFLHRITPDTQHLFSNEMARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCEASGFCYSNDLVLGILELLKRHARVLYIDIDVHHGDGVE
EAFYFTDRYIALKLEFYILISFVLQEVGERKGKFYAINVPLKDGIDDTSFSRLFNTIISK
VVETYLPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVKFVKKFNIPLLVTGGGGYTKEN
VARCWSVETGVLLDSELPNEIPDNEYIKYFSPDCLLRIPSGHIENLNSKSYLSTIKIQVL
ENLGCIQHAPSVQMQKRXVPPDFYIPDFDEDEQNPDERLDQHTQDKHIQRDDEYYEGDND
NDHNMEDM
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgcgtttaaaggataaaatcgcctatttttacgacggggatgtgggtagcgtctacttt
gggccgaaccaccccatgaaaccgcaccggctatgtatgacccatcatctcgtcctctcc
tacgatctccacaaaaagatggaaatttatcggccgcataaggcgtatccggtggagctt
gcgcaattccattcagctgaccatgttgagtttctgcacaggattacgcccgacacccag
cacttgttctcgaatgaaatggcaagatataatcttggagaagattgccctgtatttgat
aacttatttgaattttgtcaaatttatgctggcggaacaatagatgctgcacgtaggttg
aacaataaactttgtgatattgctatcaattgggctggtggactacaccatgccaaaaag
tgtgaggcatccggattttgttacagcaatgacttggtcttggggatcttggagcttcta
aaacgtcatgcccgagtattgtatattgacatagatgtgcatcacggtgatggtgtagaa
gaagctttctattttactgataggtacatagctttgaaattggaattttatatattaata
tcattcgttttgcaggaagtaggagaaagaaaaggcaagttttatgccatcaatgtccca
ctaaaagatggaattgatgacactagcttcagtagacttttcaacactattatttctaag
gttgttgagacatatctaccaggcgcgatagttctccagtgtggagcagattctcttgct
ggagaccgtttgggctgcttcaatctctccattgatggccatgccgaatgtgttaagttt
gtgaagaaatttaatatacccttactggttacaggaggtgggggatacacgaaagagaat
gttgctcggtgttggagtgttgaaactggggttcttcttgattcagaacttcccaatgag
atcccagataatgagtatatcaagtatttttctccagactgcttgttgaggattccaagt
gggcatatagagaacctaaatagtaaatcgtatcttagcacaattaaaatacaagtcttg
gaaaatctgggttgcatccaacatgctcctagtgtacagatgcaaaagaggtaagttcca
cctgatttctatattcccgactttgatgaagatgagcagaatcctgatgaacgtctggat
cagcacactcaagacaagcacattcagcgcgacgacgaatattacgaaggagacaacgat
aacgatcacaacatggaagatatgtaa

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