KEGG   Malus domestica (apple): 103424256
Entry
103424256         CDS       T03194                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03030  DNA replication
mdm03410  Base excision repair
mdm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    103424256
   03410 Base excision repair
    103424256
   03420 Nucleotide excision repair
    103424256
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103424256
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103424256
Enzymes [BR:mdm01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     103424256
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    103424256
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      103424256
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 103424256
NCBI-ProteinID: XP_070675117
LinkDB
Position
03:join(14143124..14143285,14143599..14143664,14143764..14143823,14143910..14144005,14144858..14145018,14145190..14145278,14145369..14145586,14146187..14146273,14146418..14146552,14147359..14147481,14148166..14148249,14148861..14149025,14149152..14149328,14150479..14150592,14151381..14151485,14151790..14151908,14152021..14152162,14152225..14152319,14152526..14152631,14152771..14152850,14152959..14153135,14153329..14153416,14153560..14153640,14153723..14153866,14154157..14154252,14154442..14154642,14155388..14155442,14155522..14155664,14155743..14156197,14157630..14157771,14157851..14158072,14158157..14158231,14158569..14158759,14160519..14160699,14160801..14160865,14161375..14161507,14161594..14161695,14161797..14161880,14162443..14162517,14162685..14162744,14162831..14163093,14163382..14163430,14163792..14163952,14164190..14164256,14164956..14165066,14165207..14165377,14165467..14165679,14165962..14166068,14166406..14166802)
AA seq 2230 aa
MSGYQSRKRDRGDSWVPRKQKVMRTAEEELESKLGFDLFSEGDTRLGWLLNFATSSWEDQ
DTRKVYSCVDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYQNQIADVQI
VQKEDLDLKNHLSGLRKSYLKLSFDNVQQLMNVKSDLLHVVERNRTKFDAAEAYESILIG
KREQRTQDFLDCIVDLREYDVPYHVRFAIDNDVRCGQWYDVSVSSSGSVLKMRTDLLQRA
EVHVCAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGDDIEDLEYTPKPE
FEGFFKVTNVKNEVELLGKWFCHMREVKPGIYVTYNGDFFDWPFMETRAAYHGFKLSDEV
GFQCDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYHPLEVNPEDMVR
FAKEKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLM
VQAYKANVICPNKHQSDPEKFYKNHLLESETYIGGHVECLESGVFRSDIPTSFKLDGSAY
EQLINNLDRDLQYAIRVEGKMDVDSVSNYEEVKSSILEKLVGLRDEPIREECPLIYHLDV
AAMYPNIILTNRLQPSSIVTDEICTACDFNRPGKTCLRNLEWVWRGEIFMAKKSDYYHLK
KQIESEFVDGGNSKLSKSFLELPKMEQQSRLKERLKKYCQKAYRRVVDKPVSEVREAGIC
MRENSFYVDTVRSFRDRRYEYKGLNKIWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLA
HKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCA
LPGSFPENFTFKTKDTKKKLTISYPCVMLNVDVARNNTNDQYQTLTDPFKNTYTTHSECS
IEFEVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAE
LFDKFLHGSTLEECYSAVASVANRWLDLLDNQGKDIADGELLDYISESSTMSKSLVDYGE
QKSCAVTTARRLADFLGDTMVKEKGLRCQYIVACEPKGTPVSERAVPVAIFETDAEIMKF
YVRKWCKVSSDVGIRSIIDWSYYKQRLGSAIQKIVTIPAAMQKVANPVPRVAHPDWLHKK
VREKEDKFRQRKLIDIFKSLNRDHMLEKSSDAIDSSHVLGQESVDDLEDFNKKNSSINGP
RPIVRCYEVNRKKNSVETTCQIDSQQQQTNNKENEHQEQNGVPLQCIDRNVDYHGWLETK
KRKWKDTLDRRKKQRLNDARSAHHANIELLGGGRNKKGTQGKIGVNSYFRRHEEALTRCH
WQILQLVPSSQGDQFYAWVVIEGIMLKIPVTVPRVFYINSKAPIEKIFNKISEEIPPVKD
VKKALPHGRRIYNLYEATIDEGQFRTIRKRLAALLGDPEVEGIYETKVPLEFNAIIQIGC
VCKVDKTAKKRNVQDGWSVSELHMKTTTECSYLDQSISFFYLYQSTSEGRAIYIAYFPSS
TTIKVVVVNPYQNKDLSPSFLEKLFRDACQTLSVQPPPRNGIIIKVDYVGFVKDAETVLH
RLINEYRHEYPGPTIAVIECPNFQMMKSGIGALDDFPCVSIPSNARDSLYQVLGWQQVAA
KIGMQRCAASPQWLNERISLSRYAHVPLGNFELDWLIHTADIFFSRALRDQQQVLWISDD
GIPDLGGINEEDSCFADEVCELNFSYPGAYRKITVELKIHHLAVNALLKSNQVNEMEGGS
LLGFESDANSGVHTFDAQVGFDEATSCAPTFRVLKQLIQRCLSNAVTSGNVYADALLQHL
YRWLCSPQSKLHDPSLHRILHKVMKKVLAILMTEFRKLGAKIIFANFYKVIIDTGKLDLS
AAKAYCDSLLKTLQTRELFEWIELEPLHFWHSLLFMDQFNYGGIPVGADGSMHGEAQMDI
VSSWNIAEYLPKKIQDHFVYIVSQYLYIPWDYAQKQAAVRTSLQSDSICTPSINVADAET
FESHMIDFLKGQIGSYFTDKLLGIVHDTMLHMKELKKSENDHGTSLELPQIAGNIHRGDA
ALEFIKHVCGVFSIDQNVVHDVLVMRKNLLKIVRVREFAPEAEFHDPGPTFTLPNVICSY
CNDCRDLDLCRDSALLAGEWRCCVPQCGQLYDKEVMENALLQIVRQRERLYHLQDLECLR
CHQVKAARLAEQCVCAGSYKCRQNATEFRTQMELIWMIAIHQKFQLLQECTEWILEVSNS
LRGQPIFLIV
NT seq 6693 nt   +upstreamnt  +downstreamnt
atgagcggctaccagagccgaaagcgggaccgtggcgactcatgggtccccaggaagcag
aaggtcatgcggaccgccgaggaggagctggagtccaagctagggttcgatctgttctcc
gaaggcgataccaggctcggctggttgctcaatttcgccacctcatcttgggaggatcaa
gacacccgtaaagtatatagttgtgtcgatttgtatttcgtttctcaggatggttctact
tttaagtcaaaatacaagtttcgcccttatttctatgcagccacaaaggagaaaatggaa
atggacgttgaagcatatttgagacggcgttatcaaaatcaaattgctgatgttcaaata
gtgcagaaagaagatcttgatctcaaaaatcatttgtctggccttcgcaagtcctaccta
aagctgtcgtttgataatgttcaacaactaatgaacgtcaagagtgacttgctgcatgtc
gtcgaaagaaaccgcaccaaatttgatgctgcagaagcttatgagtcaatattaattggg
aaacgagaacaaaggactcaagattttttagattgtattgttgatcttcgtgaatatgat
gttccttaccatgtccgctttgccattgacaatgatgtacgatgtgggcagtggtatgat
gttagtgtatccagtagtggctctgtgcttaagatgaggacagatcttctccagcgtgct
gaagttcatgtctgtgcatttgatattgagacgacgaagctacctttgaaatttccagat
gctgaatatgatttaataatgatgatttcatacatggttgacggacaaggttacttgatt
attaacagagagtgtgttggggatgatatagaggatttggagtacactccaaaaccagaa
tttgaagggtttttcaaggtgacaaatgtgaagaatgaggtagaacttctaggaaaatgg
ttttgccatatgcgggaggtgaagcctggaatttatgtcacatacaatggtgattttttc
gactggcctttcatggaaaccagagccgcgtatcatgggtttaaactgagtgatgaggtt
ggatttcaatgtgacaagaatcagggggagtgccgagctaaatttgcttgccatcttgac
tgttttgcatgggtcaaacgtgatagttatcttcctcaggggagccagggccttaaggct
gttacaaaggcaaagttaggttatcatccactggaggtgaatcctgaggatatggttcgc
tttgcaaaggagaaacctcagatgatggcatcctattctgtttctgatgccgttgcgact
tattacttgtatatgacttatgtgcatccattcattttctctctcgcaactattattcca
atgtctccggacgaggttttgcgcaagggtagtggaactctttgtgaaatgcttctcatg
gtccaggcatacaaggcaaatgttatctgccctaacaaacatcaatctgatcccgaaaag
ttctataaaaatcaccttttagagagtgagacttatataggtggccatgttgaatgcctt
gaaagtggtgtttttagatctgatattccaactagctttaagcttgatgggtctgcctat
gagcaattgatcaacaatcttgatcgagatcttcaatatgctataagagtagagggtaag
atggacgttgattcagtatccaattatgaagaagtaaagagttctatattggaaaagctt
gtggggttgcgagatgaacctatacgtgaagagtgcccccttatttatcatctggatgtt
gctgcaatgtatcccaacatcattttgacaaacagacttcagccatcatcaatagttaca
gatgagatttgcactgcttgtgatttcaatcgcccaggtaaaacatgtcttcgcaacctt
gaatgggtttggcgtggagaaatattcatggcaaagaaaagtgactattatcatttgaag
aagcaaattgagtctgagtttgttgatggcggcaattccaagctgtcaaaatcttttctt
gagttgcctaaaatggaacaacaatcaaggctcaaagagcgccttaaaaaatactgtcag
aaggcgtatagacgagtagtggacaagccagtcagtgaagttcgggaagcagggatctgc
atgagggaaaattcattttatgttgatacagttcgaagctttcgagatagaaggtatgag
tacaaagggcttaataagatttggaaggggaagttgtctgaagccaaggctagtggaaat
tctataaaaatccaggaagcacaagatatggtagtgctttacgattcattacaacttgca
cataagtgtatacttaattccttttatggatatgtcatgcgcaagggtgcgagatggtat
tctatggaaatggctggagtagttacatataccggagccaaaattattcaaaacgctcgc
ttgctggttgagaaaattggaaaacctcttgagttagacacagatggtatctggtgtgcg
cttcctggatcttttccagagaactttacattcaaaacaaaagacacgaagaagaagctg
actatctcatatccctgtgtaatgcttaacgttgatgtggcaagaaacaatacaaatgac
caataccagactcttacagatccttttaagaatacttacacaactcatagtgagtgttca
attgaatttgaagtggatggaccatacaaggcaatgattcttcctgcttctaaagaagaa
ggcattctaattaagaagcgatatgctgtttttaatgatgatgggacccttgctgaactt
aaaggttttgagatcaagcgtaggggtgagctgaagctcatcaaagttttccaggctgag
ctttttgataagttccttcacggttctactttagaggaatgctattccgcagttgcttct
gtcgccaaccgttggcttgatctccttgataatcaaggaaaggatattgcagacggtgaa
ttgctggattatatatcagagtcaagcaccatgagcaagtctttagtagactatggagag
caaaagtcatgtgcagtgaccactgcaagacgtcttgctgattttcttggtgatacgatg
gtcaaagagaaaggactgcgttgccagtatatagttgcatgtgaaccaaagggcacacct
gttagtgagcgtgctgttccagttgcaatatttgaaacagatgctgaaattatgaagttt
tatgtacggaagtggtgcaaggtttcatcagatgttggcattcgatccattattgactgg
tcctattacaaacaacgccttggttcggcaattcagaaaattgtcactattccagctgca
atgcaaaaggttgcaaatccagttcctagagtagctcatcctgattggctgcataagaag
gttcgtgagaaggaggacaaatttcgccagcgcaagttgattgatatcttcaagtcattg
aacagggatcatatgctagaaaagagcagtgatgctattgactctagtcatgtgcttggt
caagagagtgttgatgatttggaagacttcaacaaaaaaaacagttccataaatggaccc
agaccaattgttcgctgttatgaagtcaatcgcaagaaaaattcagttgaaacaacttgc
caaatagattcacagcaacaacaaactaataataaagaaaatgagcatcaagagcaaaat
ggtgtccctttacagtgcattgatagaaatgtggattatcatggttggcttgaaacgaag
aagagaaaatggaaagatactcttgacaggaggaaaaagcaaagattgaatgacgcaagg
tctgctcaccatgctaatattgagctgcttggtggtggtagaaataagaaaggaactcag
ggaaaaataggtgtgaattcatattttaggaggcatgaagaagccctaacacgctgtcat
tggcagatattacaactagtgcccagttctcagggtgaccaattttacgcttgggtggtt
attgaaggaatcatgcttaagatccctgttactgttccaagagttttttacattaattct
aaggcacctattgaaaaaatatttaataaaatatctgaagaaatacctccagtaaaggat
gtcaaaaaggctcttcctcatggaaggcgtatctacaacctatatgaggctacaattgat
gagggtcagtttaggacaattagaaaaaggcttgcagctcttcttggcgatccagaagtt
gagggaatatatgaaacaaaggtacccttggagttcaatgcaatcattcagattggttgt
gtttgcaaagtggataaaactgctaagaaaagaaacgtccaagatggttggagtgtgagt
gaactgcacatgaagacaactacagagtgctcatatctggaccaatccatctctttcttt
tacttgtatcagagcacatctgaagggcgagctatatatattgcctattttccttcatca
acaacaataaaggttgtggtggtaaatccttatcaaaataaagatttgtcaccatctttt
ctggaaaaattatttcgtgatgcttgccaaacattatcagttcagccacctcctaggaat
ggtatcattataaaggtggactatgttggattcgtcaaggatgctgaaacagttttgcac
cgtttgattaatgagtacagacatgaatatcctggacctacaattgctgttatcgaatgc
ccaaattttcaaatgatgaagtcaggtataggagctcttgatgattttccgtgtgtgagc
attccctctaatgctcgtgatagtctctatcaggttcttgggtggcagcaagtggctgca
aaaattggaatgcagcgttgtgctgcatcacctcagtggttgaatgagagaatttcactc
tcaagatatgcccatgttccattgggaaatttcgaacttgactggcttatacatacagca
gatatcttcttttcaagagcactacgtgatcaacaacaggtgctttggatatctgatgat
ggtattccagatctaggaggcattaatgaagaagattcatgttttgctgatgaggtctgt
gaacttaatttttcttaccctggagcatataggaagatcactgtggagctaaagatacat
catctagctgtaaatgctcttttaaaaagcaaccaggtgaatgaaatggaaggaggttct
ttgctaggatttgaatcagatgcgaactccggagtacatacttttgatgcacaagttggc
tttgatgaagctacctcatgtgctcctacattccgtgtcctgaaacagttgattcagagg
tgtctttcaaatgcagttacatctggaaatgtgtacgctgatgcactattgcaacattta
tatcgatggctttgcagcccccagtctaagcttcatgatccatctcttcaccgcatactt
cataaggtcatgaaaaaggtgcttgcaattttaatgactgagttccgcaaattgggtgcc
aagatcatattcgcgaatttctacaaggttattatagacacaggaaaacttgacctatca
gctgccaaagcgtattgtgatagcttgcttaaaactctgcaaacaagagaactatttgag
tggatagagcttgaaccactacacttctggcattctttgcttttcatggatcagtttaac
tatggtggaattccggttggagctgatggaagcatgcatggtgaagctcaaatggatatt
gtatcaagctggaatatcgctgaatacttgcccaagaaaattcaggaccactttgtttat
attgtctctcagtatctgtatattccctgggattatgcacagaagcaggcagcagttaga
acatctttacagagtgacagcatttgcacgccatcaatcaatgtagcagatgctgagact
tttgagtctcatatgatagatttccttaaaggacagatcggctcatattttacagataaa
cttttgggaattgttcatgataccatgcttcatatgaaggaactgaaaaaatcagagaat
gaccatggtacatctcttgagctgccacaaattgctggtaatatccaccgaggggatgca
gcactggagttcatcaagcacgtctgcggtgttttctcaattgaccaaaatgttgtccat
gatgttttggtaatgagaaagaatctgttgaagattgtacgtgtgagggagtttgccccc
gaagcagagtttcatgatcccggcccaaccttcactttaccaaatgtcatttgcagctac
tgcaacgattgtagagacctggacttgtgccgtgactcagctcttctagctggggagtgg
cgttgctgtgtaccacaatgcgggcagctttatgacaaagaggtaatggagaacgccctt
cttcagattgtgcggcagagagagcgtctttaccacctacaagatctcgaatgcctcagg
tgtcaccaagtgaaagctgcacgcttagcagagcaatgtgtatgcgctggctcatataag
tgcaggcaaaacgcaactgaatttcgtacccagatggagttaatttggatgattgccatt
catcagaaatttcaacttctccaagagtgcactgaatggattttagaagtgagcaactct
ttaagggggcagccaatatttctcatagtttga

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