Malus domestica (apple): 103424685
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Entry
103424685 CDS
T03194
Name
(RefSeq) SWI/SNF complex subunit SWI3C-like isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
mdm
Malus domestica (apple)
Pathway
mdm03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
103424685
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103424685
03036 Chromosome and associated proteins [BR:
mdm03036
]
103424685
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
103424685
Chromosome and associated proteins [BR:
mdm03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
103424685
PBAF complex
103424685
GBAF(ncBAF) complex
103424685
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
Motif
Other DBs
NCBI-GeneID:
103424685
NCBI-ProteinID:
XP_008361002
LinkDB
All DBs
Position
08:complement(join(18221084..18221545,18222461..18222645,18222759..18222832,18223146..18223273,18224117..18224190,18224284..18224647,18226135..18226673,18227458..18227973,18228122..18228140))
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AA seq
786 aa
AA seq
DB search
MPASPSDSRGKWRKRKRDAQIRRNKREDDEDDDADDNELDPNDDSEDPQHNPQSTPAPDP
APHETEVLDGGVRVSDFPPVVLRTVNRPHSSVLALVALERANHCGGDAKGPASPIVLENV
SYGQLQALSAVPADSPALDPDRADGSGAAYVVTPPSTMEGRGVVKRYGNRVHVVPMHADW
FSPATVHRLERQVVPHFFSGKSSDHTPELYMHCRNEIVAKYMENPEKRLAFSDFQQLLGR
LSTEDLTRIIRFLDHWGIINYCAEAPSHEPCNGSSYLREEVNGEIQVPSAALKSIDSLIK
FDKPRCRLKAAEVYSSLPCHGDDDVSDLDNTIRKRLSENHCNYCSSSLPSVYYQSQKEVD
VLLCSNCFHEGRYVVGHSSIDFVRIDSTKDYGDLDGESWTDQETLLLLEAMEIHNENWNE
IAEYVGSKSKAQCILHFLRLPVEDGLLENIEVPGMSLSSNLSDKDGRGGFHSSSNGDAAG
SCLQDADSDSRFPFANSGNPVMALVSFLASSVGPRVAASCSHAALTVFSEDNGVSASTSI
MEGSGQRMNPESIHGREGGTYRNSANSIPQKEKNSAGHGSWGQNEAGVVPIRTEKVKAAA
KAGLAAAAIKAKLFADHEEREIQRLSANIINHQLKRLELKLKQFAEVETFLMKECEQVEK
TRQRMVSERARIMSTQFGPAGASPMSLAGVGSSMSNNNVGNNRQQIMSPSASQPSISGYS
NNQPVNPHMPFVPRQSMQGLGPRMPLTSIQPSSSAQNAMFNATGAAQPTLNHPMLRPVPG
TSSGLG
NT seq
2361 nt
NT seq
+upstream
nt +downstream
nt
atgcctgcttctccttcagactcccgcggcaaatggaggaagcggaagcgcgacgcccaa
attcgccggaacaagcgcgaggacgacgaagatgacgacgccgacgacaacgagctcgac
ccgaacgacgactcggaggacccccaacataacccccaatccactcccgcacccgatccc
gcccctcacgagaccgaggtcctcgacggtggggtccgcgtaagcgacttccctcccgtc
gttttgcgcaccgtcaaccggccccattcctccgttcttgccctcgtcgcgctcgagcga
gccaatcattgcggcggggatgccaaggggcccgccagtccgattgtattggagaatgtg
tcgtacggtcagctccaggcgctgtccgccgtgcctgccgatagtccggcgttggatccg
gaccgtgcagatggctccggagcggcttacgtggtcacacctccgtcgactatggagggc
cgtggcgttgtgaagcggtatgggaacagagttcatgtggttccaatgcacgcagattgg
ttttcacctgccacagtgcatcgactggagagacaggtggtgccgcattttttctcagga
aaatcatcagatcatactcctgagctatacatgcattgtaggaatgaaattgttgccaaa
tacatggaaaatccagagaaaaggcttgcattttctgatttccaacaattattaggtcgt
ctaagtactgaagatttgactcgaataattcgttttcttgatcactggggaattattaat
tactgtgctgaagcacccagtcatgagccgtgcaatggcagttcttacttaagggaggag
gtaaatggtgagattcaagtgccatcagctgctctgaagtccattgatagtttaatcaaa
tttgacaagcccagatgtaggcttaaggcagctgaagtttattcgtcattgccatgtcat
ggtgatgatgatgtctctgatttggacaacacaattcggaagcgtctatctgaaaatcat
tgcaattactgttcttcttctcttcccagtgtatactatcagtcacagaaagaggttgat
gtattgctgtgctctaattgcttccatgagggaagatatgttgttggtcattcaagcata
gattttgtacggattgattcaacaaaagattatggtgatttggatggggaaagttggacc
gatcaagaaaccctattgctgctcgaggcaatggaaatacacaatgagaactggaacgaa
attgctgagtatgtcggttcaaaatcaaaagcacaatgcatccttcattttcttcgtttg
cctgtggaggatggcctgcttgaaaatattgaagttccgggcatgtccctgtcctccaat
ttgtcagataaagatggtcgtggaggatttcattcaagttcaaatggtgatgcagcagga
tcctgcctacaagatgctgattctgacagtaggttcccttttgcgaattctgggaatcca
gtcatggccctggtttcgtttctggcctcctctgttgggccaagagtcgctgcatcttgt
tcccatgcagccttgacggtattttctgaggataatggtgtatctgcctctacaagtata
atggaaggatcaggccagaggatgaaccctgagagtatacatggtagagaaggtggtact
tatagaaattctgcaaattcaattccgcaaaaggaaaagaactcagcaggccatggttct
tggggtcaaaatgaggcaggggtggttccaatacgtacagaaaaagtaaaagctgctgcc
aaggccgggcttgctgcagctgcaataaaggcaaaattgtttgctgatcacgaagaacgg
gaaattcagaggctatctgctaatatcataaatcatcagttgaagagattggagctgaag
ttaaagcagtttgcagaagtggaaaccttcctaatgaaagaatgcgaacaagtggagaag
acaaggcagaggatggttagtgaacgtgcccgcattatgtcaactcagtttggacctgct
ggtgcttcgcccatgagtttagcaggtgttggttcttccatgtccaataataatgttggt
aacaataggcaacagattatgtcaccttcagcttcacaaccgagcatatcaggatacagc
aacaaccaaccagtcaatccccacatgccattcgtgccacgtcaatcaatgcaagggttg
gggccgaggatgcctttgacatccatacagccgtcctcatcagctcaaaatgccatgttt
aatgccacaggggctgcccagccgacgctaaatcatccaatgttgaggcctgtaccaggt
actagctccggtctaggttga
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