KEGG   Malus domestica (apple): 103424773
Entry
103424773         CDS       T03194                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    103424773
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103424773
   03012 Translation factors [BR:mdm03012]
    103424773
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     103424773
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     103424773
Translation factors [BR:mdm03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    103424773
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD dsrm HA2_N AAA_22 AAA_19 T2SSE nSTAND3 Dicer_dimer NPHP3_N AAA_16 AAA_30 ATPase
Other DBs
NCBI-GeneID: 103424773
NCBI-ProteinID: XP_017184882
LinkDB
Position
14:join(30340038..30340469,30340811..30340965,30341043..30341130,30341340..30341585,30341825..30341920,30342016..30342204,30342348..30342507,30342588..30342718,30343075..30343248,30343329..30343601,30343940..30344134,30344363..30344566,30344768..30344837,30344922..30345070,30345397..30345705,30346068..30346127,30346248..30346400,30346488..30346598,30346811..30347320)
AA seq 1234 aa
MPYSALYQGYIFRTTTMSLKPSTTSTTTVLVSLRGTPHRRHHVALVRPSMLLGCSMRNSR
YHHTHCLAPPLNWNACYYLPRHVGDVACQASSRAAELDWKQRKQLRSSAVPFYQQNLSYG
RFAYQDASASEESDAELGSSQRQMGGSTLDNIDEWRWKLTMLLRNKDEQELVSRERKDRR
DFDHLSALASRMGLYSRQYSRVVVFSKIPQPNYRPDLDDKRPQREVVLPFGLHREVDAHL
KAYLSEKPMSQGNVSDSSLSRSNSSRSITNDGGHYEQQEPLIQNTDAMEKILQRKSLQLR
NRQRHWQESPEGQKMLELRKSLPAYKKKDALLKAVSENQVLVVSGETGCGKTTQLPQYIL
ESEIEADRGASCSIICTQPRRISAMAVSERVAAERGENLGESVGYKVRLEGMKGRDTRLL
FCTTGILLRRLLVDRKLRGVTHVVVDEIHERGMNEDFLLIVLKELLPRRPELRLILMSAT
LNAELFSSYFGGAPMIHIPGFTYPVRAHFLENILEMTGYQLNQYNQIDDYGHEKSWKMQK
QAQGFKKRKSQIASSVEDVLEAADFREYSPRTQESLSYWNPDSIGFNLIGNLLLHIVKKE
RPGAILVFMTGWDDINSLKDQLQAHPLLGDPSRVLLLACHGSMPSSEQKLIFDKPEDGVR
KIVLATNMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAASRQRRGRAGR
VQPGECYHLYPRCVYNAFADYQLPELLRTPLQSLCLQIKSLQLGSISEFLSKALQPPEPL
SVQNAVEYLKIIGALDDSEDLTVLGHHLSVLPVEPKLGKMLILGCIFNCLDPVMTVVAGL
SMRDPFLMPHDKKDLAESAKAQFSARENSDHLALVRAYDGWRSAERTESGYEYCWRNFLS
VQTLKAIDSLRKQFFFLLKDAGLVDHNTENCNTWSHDEHLVRAVICAGLFPGICSVVNKE
KSIMLKTQEDGQVMLYSSSVNGNIPKIPYPWLVFNEKVKVNSVFLRDSTGISDSVLLLFG
GNISRGGVDGHLKMLGGYLEFFMNPALAETYLCLKRELDELIHNKLLNPKLDMQSHTSLL
SALRLLVSEDQCEGRFVFGRKVPVPSKKATQEKVPKLKGTMKKVAENNNYKNHLQTLLTR
AGHDAPTYKTKPSKNNQFRSTVIFNGLNFVGKPCNSKKEAEKDAAAEAVLWLKGENHSSS
TGIDHMSMLLKKSRKKSQKRTSFDSANGVKGCSS
NT seq 3705 nt   +upstreamnt  +downstreamnt
atgccgtactccgccctctaccagggatatatattcaggaccaccaccatgtccctcaaa
ccctccaccacttccaccactaccgttctcgtctctctccgcgggaccccccaccgccgc
caccacgtagctttggtaaggccgtcgatgctgctgggatgctccatgaggaacagccgg
taccaccacacgcactgccttgctccgccgctgaattggaatgcgtgctattatctgccg
cgtcatgtgggggacgtcgcgtgccaggcttcgtctcgggcggcggagctggattggaag
cagaggaagcagctgaggagttccgcggtgccgttttaccagcagaatttgagctatggg
cggtttgcctaccaggacgcctccgcgagtgaggagtccgacgccgaattggggtcgtct
cagcgccaaatgggtggttcgacccttgataacattgacgaatggagatggaagttaacc
atgcttcttcgcaacaaagatgagcaagaattggtgtccagggaaagaaaggatagacgc
gattttgatcatctttcagcactggcaagtaggatgggtttatatagccgtcagtattct
agagttgtagtatttagcaaaattcctcagccaaattacagacctgatctggacgataag
cggccacaaagagaggttgtcttaccttttggacttcatagagaagtagatgctcatctc
aaagcctacctatctgaaaagccaatgagccaaggaaatgtatcagattcttccttgtca
agatcaaacagtagtagaagcattactaatgatggaggacattatgagcagcaggagccc
ttgatacagaatactgatgccatggagaaaattcttcagcggaaaagcttgcaactgcgt
aataggcaacgacattggcaggaatctccagaaggtcaaaagatgcttgaacttcgtaaa
agtctgcctgcatacaagaagaaagatgcactgttaaaagctgtgtcagaaaatcaggtc
ttagttgtctcaggcgaaactggttgtggtaaaactacgcagcttcctcagtacatttta
gaatctgagattgaagctgatcgcggagcttcctgcagtattatttgtacccagcctaga
cggatatctgccatggctgtttctgaaagagttgctgcagaacgaggggagaatctgggg
gaatctgttggttacaaagttaggcttgaagggatgaaagggcgggacacccggcttctt
ttttgcaccacgggtatattattgaggagattacttgttgacagaaagttgagaggtgtt
acacatgtcgttgttgatgagattcatgaacgcggaatgaatgaagattttcttcttatt
gttctgaaagaacttctccctcgccggccagagttgaggttgattttgatgagtgccacg
ctaaatgctgagcttttctcctcctactttggtggtgctccaatgatccatattcccggg
tttacatacccagtccgagcacattttctggagaatattctagaaatgactgggtatcag
ttgaatcaatataatcagattgatgattatggtcatgaaaagtcgtggaaaatgcagaaa
caagctcaaggtttcaaaaagaggaagagccaaattgcttctagtgttgaggatgtactt
gaagctgctgactttagggagtacagtccaaggactcaggagtctttgtcctattggaat
cctgactccattggttttaacctcattgggaatcttcttttacacatagtcaagaaagaa
cggcctggtgcaattttggtttttatgacgggttgggatgacataaattccttgaaggat
caactccaagctcatcccctattaggagatcctagcagggtcctactgctagcatgtcat
ggttccatgcctagctctgagcagaaattgatatttgataagccagaagatggtgttcgg
aaaatagttctagctacaaacatggctgagactagtatcactatcaatgatgtagttttt
gttgttgattgtggaaaggcgaaagagacatcatatgatgcactaaataacactccctgt
ttgcttccatcctggatttcaaaggctgcttctcggcaaaggagaggtagagctggtcgt
gttcaacctggtgagtgttaccatctctaccccagatgtgtatataatgcctttgctgat
tatcagttgcctgaacttttgaggactcccttgcaatctttatgtttacaaatcaaaagt
ctacaacttggaagtatttcagagttcctatctaaggccttgcagccacctgaacctctg
tcggttcaaaatgctgttgagtatttgaagatcattggggctttagatgatagtgaagat
ctgacagtgttaggacatcacctgtcagtgcttcccgttgagcctaaacttggaaaaatg
ctcatattagggtgtattttcaactgtctggatccagtaatgactgttgtcgcaggcctc
agtatgagagatccattccttatgccgcatgacaagaaggatcttgcagagtcggcaaaa
gcacagttctctgctcgtgaaaacagcgatcatcttgctctcgtccgagcttatgatggt
tggagaagtgctgaaagaacagagtctggctatgagtactgctggagaaacttcctttct
gtgcaaactctgaaagccattgactctcttcggaagcagttcttctttttgctcaaggat
gcgggtctggttgaccataatacagaaaactgcaatacatggagccatgatgagcatctt
gtccgagcagtcatctgtgctggattatttccgggaatatgctctgtcgtgaacaaagag
aagtcaattatgctgaaaacacaggaagatggacaagtgatgctatactcgagttctgtc
aatggaaacatacccaaaattccatatccatggcttgtcttcaacgaaaaggtgaaagtg
aattcagtttttctccgggattcaactggtatatctgattctgtgctccttttgttcgga
ggcaacatttccaggggtggcgtggatgggcacttgaagatgctgggaggatacttagag
tttttcatgaatcccgcattagcagaaacatatctttgcttaaagagggagcttgatgaa
ctgatacataataagctcctgaatcccaaattggatatgcaatcacacacgagcctccta
tcagcgctaagattactggtctcagaggatcaatgtgagggtagatttgtatttggccgc
aaggtgccagtgccctcaaagaaggcaacacaagagaaggtaccaaagttaaaaggcacc
atgaagaaagttgcggagaacaataattacaaaaatcacctccaaacattgctcaccaga
gccgggcatgatgcacccacctacaaaacaaaaccatcgaaaaacaaccagttccgttcc
acagtgatcttcaatgggttgaactttgtaggcaaaccttgcaatagtaagaaagaagca
gagaaggacgcagctgctgaagctgtactctggttaaagggagagaatcattcatcgtcc
acaggtattgaccatatgtcgatgctgcttaagaaaagtagaaagaaaagccagaaaagg
acctcatttgatagtgccaatggggttaagggttgctcgtcatag

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