Malus domestica (apple): 103425049
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Entry
103425049 CDS
T03194
Name
(RefSeq) serine/arginine-rich splicing factor SR45a-like isoform X1
KO
K12897
transformer-2 protein
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103425049
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
mdm01009
]
103425049
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103425049
Protein phosphatases and associated proteins [BR:
mdm01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
103425049
Spliceosome [BR:
mdm03041
]
Common components
Common spliceosomal components
SR proteins
103425049
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_DEAH11
RRM_occluded
RRM_5
NMT_C
Motif
Other DBs
NCBI-GeneID:
103425049
NCBI-ProteinID:
XP_017184962
LinkDB
All DBs
Position
15:complement(join(19360427..19360668,19360762..19360831,19361428..19361577,19361689..19361788,19361942..19361971,19362095..19362226,19363170..19363189,19363283..19363285))
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AA seq
248 aa
AA seq
DB search
MADSPRKKYSRSPSPWRAQSRSRSRSWSRPRSRSRSLSRPPRQRSRSRSRGRSRSRSPGR
LVAAAINPGNTLYVTGLSTRVSEKDVERHFSKEGKVASCFLVMEPRTRISRGFAFITMDS
VEDAERCIKNLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKNTRDYGYRGDRDRDRER
DRDRDRGRYRGGSARDDYGYRRSPRRSPYRGGRDYSPRGGSPYGGRSRRERSYSPYGSPE
RKYARGSR
NT seq
747 nt
NT seq
+upstream
nt +downstream
nt
atggcggattctccacgcaaaaagtattcacgatccccttctccttggagagctcagtcc
aggtccaggtctaggtcttggtctaggccgaggtcgaggtcaagatcattgtctaggcca
ccaaggcagaggtctcgctctagaagtcgtggcagatcaaggtccagaagtcctggcagg
ttggtggctgctgctataaatcctggaaatacattgtatgtgaccggcctatctacaagg
gtctcagagaaggatgttgaaaggcacttttcaaaggagggaaaggtagcttcatgcttt
cttgttatggagcctcggactcggatttctcgtggttttgccttcattacgatggactca
gttgaagatgctgaacggtgcattaaaaatctcaatcagtcagttctggaaggtcgatac
ataactgttgagaggtctcggaggaagcgaccaagaacgccaacacctgggcattatctt
gggttgaaaaatactagagactatggctaccgaggtgatcgtgatcgagatcgtgaacgt
gatcgtgatcgtgatcgtggtaggtaccgtgggggatcagctcgtgatgactatggatat
aggaggtctccaaggcgctcaccctatagaggtggccgtgattattctccaaggggcggc
tcaccttatggcggaagatcaagaagagagaggtcttattctccctatggaagcccggaa
agaaagtatgctcgtggctctagatga
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integrated database retrieval system
