KEGG   Malus domestica (apple): 103425732
Entry
103425732         CDS       T03194                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03013  Nucleocytoplasmic transport
mdm03015  mRNA surveillance pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103425732
  09122 Translation
   03013 Nucleocytoplasmic transport
    103425732
   03015 mRNA surveillance pathway
    103425732
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:mdm03019]
    103425732
   03041 Spliceosome [BR:mdm03041]
    103425732
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     103425732
Messenger RNA biogenesis [BR:mdm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     103425732
Spliceosome [BR:mdm03041]
 Complex C
  Other components
   EJC/TREX
    103425732
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    103425732
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 103425732
NCBI-ProteinID: XP_008362046
LinkDB
Position
09:join(23510559..23510674,23511383..23511483,23512174..23512346,23512534..23512765,23512878..23512996,23513140..23513196,23513285..23513469,23515586..23515730,23515861..23515944,23516085..23516148,23516392..23516402)
AA seq 428 aa
MGDVRDNDGYEEELVDYEEEDQNAPNSVSAKPSGDTVKKGYVGIHSSGFRDFLLKPELLR
AIVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALI
LCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVGIKVHKDLLKNECPHIVVGTPGRVLA
LARDKELGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPV
CKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEPEKNRKLTDLLDALDFNQVVIFVKSVS
RAAELNNLLADCNFPSICIHSGMPQEERLKRYKNFKEGLSRILVATDLVGRGIDIERVNI
VINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQSRFEVDIKELPEQI
DTSTYMQA
NT seq 1287 nt   +upstreamnt  +downstreamnt
atgggtgatgtcagagacaacgatgggtacgaagaggagctcgtcgactacgaagaggag
gaccagaacgcccccaactccgtttccgccaagccctctggcgataccgtcaaaaaggga
tatgttggcatccatagttcaggattcagagacttcctattgaagccggagcttcttcga
gcaattgtggattctggattcgaacatccttcagaagttcaacatgagtgcatcccccaa
gctatcttaggaatggatgttatttgtcaagcaaaatctgggatgggaaaaactgccgtc
tttgttctatcaacccttcagcaaatagatccagtacctggtcaggttgctgctcttatt
ctttgccacacgagagaattggcttaccagatttgtcatgaatttgagaggttcagtact
tatttgccggacctgaaggttgcagttttctatggaggagtcggtatcaaggttcacaaa
gatttgctaaaaaacgaatgtcctcacattgttgttggtacacctgggagagtattagct
ttggcaagagacaaagagcttggactgaagaatgtcagacattttattcttgatgaatgc
gataagatgcttgagtcacttgacatgaggagagatgtgcaggagatctttaagttgact
cctcatgacaagcaggtgatgatgttttcagcaacactaagcaaggaaatccgccctgtt
tgcaagaagtttatgcaagatcccatggaaatctatgtagatgatgaagccaaattgact
cttcatggtctcgtacagcactacatcaaattgagtgagcctgagaaaaaccgcaaattg
actgacctccttgatgcattggatttcaaccaagttgttatttttgtaaaaagtgtaagc
agagcagctgagctgaacaatttacttgctgattgtaacttcccctccatctgcattcac
tctggaatgccgcaggaagaaaggctaaaacgttataagaatttcaaggaggggctttca
agaattcttgtggcaacggatttagtaggaaggggaattgacatcgagcgtgttaacatt
gttatcaattatgacatgcctgattctgctgatacctacttacacagggttggcagagct
ggtaggtttggtaccaaggggttagcaattacatttgtctcttctgcatctgattctgat
gttcttaatcaggtccagtcaaggtttgaggtggatataaaggagcttccggaacaaatt
gatacttctacttacatgcaagcgtaa

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