Malus domestica (apple): 103426093
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Entry
103426093 CDS
T03194
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103426093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103426093
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
103426093
Spliceosome [BR:
mdm03041
]
Complex C
Other components
Step II factors
103426093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
nSTAND3
AAA_30
TsaE
Sigma54_activ_2
PhoH
AAA_16
T2SSE
Motif
Other DBs
NCBI-GeneID:
103426093
NCBI-ProteinID:
XP_008362402
LinkDB
All DBs
Position
17:27912796..27917639
Genome browser
AA seq
1215 aa
AA seq
DB search
MAAADDGLKKLEYLSLVSKVCSELETHLGFGDKVLAEFITEIGRSCETVDEFDARLKENG
AEMPDYFVRTLLTIIHAILPPKPKPEKDASKKDGASEGKKTKFKALAIADNRDRVKEIDK
EIEMETREKHTDGEERDGEREDDRRRGRDKYRDGDRDRDRDRDRDRHRGRDRDGRGRGRD
RHDRDERRRDSHYNDDDGERGRRRDSHYNDDDGERGRHTDRYGKHKRDGYEENGIEREDD
DRRGNRDRQNGPSKNLSDEPELYQVYKGRVSRVMDTGCFVQLNDLRGKEGLVHVSQMATR
RISNAKDVVKRDQEVYVKVISVSGQKLSLSMRDVDQHSGKDLLPLKKSSEDDAYRTNTSV
SRDGPVTRTGLSGIRIVEEDDVGPSRRPLKRMSSPEKWEAKQLIASGVLGVTEYPMYDDE
ADGMLYQEEGAEEELEIEINEDEPAFLNGQTRYSVDMSPVKIFKNPEGSLSRAAALQSAL
IKERREVREQQQRTMLDSIPKDLNRPWEDPMPETGERHLAQELRGVGLSAYDMPEWKKDA
FGKTISFGQRSKLSIQEQRQSLPIYKLKKELVQAVNENQVLVVIGETGSGKTTQVTQYLA
EAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTD
GMLLREILIDENLSQYSVVMLDEAHERTIHTDVLFGLLKKLLIRRPDLRLIVTSATLDAE
KFSGYFFDCNIFTIPGRTFPVEILYTKQPESDYLDASLITVLQIHLTEPEGDILLFLTGQ
EEIDFACQSLYERMKGLGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAE
ASLTIDGIFYVIDPGFAKQNVYNPKQGLDSLVITPISQASAKQRAGRAGRTGPGKCYRLY
TESAYRNEMSPTSIPEIQRINLGTTTLTMKAMGINDLLSFDFMDPPSPQALISAMEQLYS
LGALDEEGLLTKLGRKMAEFPLDPPLSKMLLASVDLGCSDEILTIIAMIQTGNIFYRPRE
KQAQADQKRAKFFQPEGDHLTLLAVYEAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLL
SIMDKYKLDVVSAGKNFTKIRKAITAGFFFHGARKDPQEGYRTLVENQPVYIHPSSALFQ
RQPDWVIYHELVMTTKEYMREVTVVDPKWLVELAPRFFKVSDPTKMSKRKRQERIEPLYD
RYHEPNSWRLSKRRA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atggcggctgccgacgacggtctgaagaagttggagtacctttcgctggtctccaaagtc
tgttcagagctcgagacgcatctagggtttggggacaaagttctggcggagttcatcacc
gaaatcggacggagctgtgagacggtggacgaattcgacgcccgattgaaggagaacggc
gcagagatgcccgactacttcgtccgtacactcctcactattatacacgcaatcctccct
ccgaagccgaagccggagaaggacgcctcgaagaaagacggcgcttctgaaggtaagaaa
accaagtttaaggctttggctattgctgataatagagatagagttaaggagattgataag
gaaattgagatggagactagggagaagcacaccgacggagaggagcgggacggagagcgt
gaagacgataggcggaggggtagggataaatatagggatggagatagagatagagataga
gatcgggatcgtgataggcacagaggtagggatagagatgggagaggcaggggaagggat
aggcatgatagagacgagaggcgtagagattcacattataatgatgatgatggggaaaga
gggaggcgtagagattcacattataatgatgatgatggggaaagggggaggcatacagat
cgatacggtaagcataagagagatgggtatgaagagaatggaattgaaagagaagatgat
gataggagaggtaatagggataggcagaatggtcctagtaagaacctttccgatgaaccc
gaattgtaccaggtgtataagggtagggtttcgagagtgatggacaccggttgctttgtt
cagttaaatgatttgagagggaaggaaggtttggttcatgtttcacagatggcaactcgg
cgaattagtaatgctaaggatgtggtgaagagggatcaggaagtttatgttaaggtgatt
tctgtttcgggtcagaagttgagcctttcgatgagggatgttgatcagcattctgggaag
gatttgcttccgttgaagaagagctcagaggatgacgcttataggaccaacacgtcggtg
tctagagacggacctgtgactaggactggtctttctgggattaggattgtggaagaggat
gatgttggtccatcacgccggccattgaagcgaatgagctcacctgagaagtgggaagcc
aaacagttaattgcctcaggtgttttgggtgtgacagagtacccaatgtatgatgatgaa
gcagatgggatgctatatcaagaagagggagctgaggaagagcttgagattgagatcaat
gaggatgagccggcctttttgaatgggcagaccaggtattctgtggatatgtcccctgta
aaaatctttaagaatccagaagggtctttgagtcgtgcagctgcacttcagtctgcactc
attaaggagcgtagagaagtgcgagagcagcagcaaagaaccatgttggattccatccca
aaggatctgaatcgtccctgggaagatccaatgccagagactggtgagaggcatcttgcc
caggagcttagaggtgttggtttgtctgcatatgatatgcctgagtggaagaaggatgct
tttgggaaaaccatcagctttgggcagaggtctaagctatcaattcaggaacagaggcag
agcttgcctatatacaagctgaagaaagaattggttcaggcggtgaatgagaatcaagtg
ctcgtcgtcattggtgagactggttctggtaagacaacccaggtaacacagtatcttgca
gaagcgggttacacgacaaagggaaagattggatgtacacagccccgtagggttgctgca
atgtccgtagccaagagggtggctgaagagtttggttgtcgtttgggggaggaagttgga
tatgctattcgttttgaggattgcactggaccagatactgtcatcaagtacatgaccgat
ggtatgcttcttagggagattttgattgatgagaacctttcccaatattctgtggtcatg
cttgatgaagctcatgagaggacaatccacacagatgttctttttggattactgaagaag
cttctgattcggagaccagaccttcgtttgattgtcacctctgctactttggatgcagag
aagttttcaggttatttcttcgactgtaacatatttactatccctgggagaacttttcct
gttgagatactctacaccaagcagccagaaagtgactaccttgatgcatctctaattact
gtcctacaaatccacttaacagaacctgaaggtgatatccttctcttcttgactggacaa
gaagagattgattttgcatgccagtctctttatgagaggatgaagggtcttggtaaaaat
gttcctgagttaattattctaccagtatatagtgcccttcctagtgaaatgcagtcaagg
atatttgatcctgccccgccagggaagaggaaagtggttgtggctactaatattgctgaa
gcatcactgactattgatgggatattttatgtcatcgatcctggatttgcaaagcaaaat
gtttataacccaaagcaggggctggattcgcttgtcattactccaatttcacaagcatca
gccaagcaacgagctgggcgtgctggacgcacagggcctgggaaatgttaccgcctctac
actgagagtgcataccgtaatgagatgtcccctacttcaattccagaaatccagaggata
aatcttgggactactacacttacaatgaaagccatggggataaatgatctcctgtctttt
gattttatggatcctccttcaccgcaagcactcatttctgccatggaacaactgtacagt
ttgggagcactggacgaggaggggctgctgaccaaattgggtaggaagatggctgagttt
cctctcgatccaccgttatctaagatgctactcgctagtgtagaccttggatgtagtgat
gagatcttgaccatcattgcaatgattcagacaggcaatatcttttacaggcctagggaa
aaacaagcccaggctgatcagaagagagctaagtttttccagccagagggagaccatctg
actttacttgcagtctatgaggcttggaaagctaagaatttctcaggtccgtggtgtttt
gagaactttgttcagtctcgatccttgaggagggcacaggatgtcagaaaacagcttctg
agcatcatggacaagtataaattggacgtggtcagtgcaggaaagaattttacaaagatc
aggaaggcaattacagcaggtttcttcttccatggtgctagaaaggacccacaggagggt
tatagaaccctagtcgagaaccagccagtttatattcacccaagcagtgctctcttccag
agacaaccagattgggttatctaccatgagctggttatgactacaaaggagtacatgcgc
gaggtgacggttgttgaccccaaatggctagtagaactggcaccaaggttcttcaaagta
tcagatcccacaaagatgagtaagcgcaagcgtcaggaacgaattgaacccttatatgac
agataccatgaacctaactcttggcgtcttagtaagcgtcgtgcttga
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