Malus domestica (apple): 103426512
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Entry
103426512 CDS
T03194
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1B-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm04120
Ubiquitin mediated proteolysis
mdm04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
103426512
04120 Ubiquitin mediated proteolysis
103426512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mdm04121
]
103426512
Enzymes [BR:
mdm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103426512
Ubiquitin system [BR:
mdm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103426512
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-RING_16
FlxA
zf-ANAPC11
zf-RING_Vps41
zf-RING_5
zf-RING_11
zf_RING_Vps8
zf-C3HC4_4
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
103426512
NCBI-ProteinID:
XP_008362820
LinkDB
All DBs
Position
01:complement(join(32143862..32144020,32144112..32144379,32144572..32144710,32145041..32145249,32145343..32145492,32145771..32145947,32146319..32146851))
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AA seq
544 aa
AA seq
DB search
MMKLQTYAGISLVATLAIVYHAFSSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCTMWQL
TKKIFLGSLREAEVERLNEQSWREVMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLA
QKRVEYIETTPSVPMLSHVRIVSFLGFLLVLDSLFLYSSVSNLIRTQKASVSLFFSFEYM
ILATTTVSTFVKYVFYVTDMLKEGQWEKKPVYTFYLELIRDLLHLSMYLCFFLAIFTYYG
VPLHLIRELYETFRNFKLRIADYIRYRKLTSNMNDRFPDATPEELNASDATCIICREEMT
TAKKLLCGHLFHVSCLRSWLERQHTCPTCRALVVPPDSGTGTAGGHRGSQSDAHQQGTGT
MAQGAGVAGDSVSQHEARLRAAAAAASIYEKSHVYASANRLVWSPGYAALPQVQRHTADS
PNTESSGEASSGQSRPQLATPAGAANLSFSQFPPYMFVPGANVAYGGRLSSDQNLTASQL
EAQKKFLQAQIGILQNQLQVLQKPKPKESVDMGPTGASLDGKGKSVAAPSSVSDCGRHED
RVDT
NT seq
1635 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagctgcaaacctatgcggggattagtttggtagcaaccctagcgattgtttat
catgcatttagtagtagaggtcagttttatccggcaatggtgtatttgtcgacgtcgaag
atcagcttggtgttgcttctcaacatgggtctggtcattatgtgtactatgtggcaattg
actaaaaagatcttccttggatcactccgggaagccgaggtggagaggcttaacgagcaa
tcgtggcgggaagtcatggaaatcctctttgccatcactatattcaggcaggacttttcg
gtctcgtttcttgctatggttactactctcttgttgatcaaggctttgcattggttggct
cagaagagggttgagtacatcgagactactccttccgtgcccatgctgtctcatgttcgg
attgtctcctttttgggtttcttgcttgttctagatagtctctttttgtacagttctgtt
agcaacttgataaggacacaaaaggcctcggtttccctcttcttttcattcgagtacatg
atactagcaacaacaacagtgtcaacgtttgtgaaatatgttttctatgtaactgacatg
cttaaggagggacagtgggagaagaagcctgtctacacgttctacttggaacttattcgg
gacttgcttcatttgtctatgtatttgtgcttcttcctcgcgattttcacgtactatggt
gtgccactgcacttgatacgtgagctttatgaaacatttaggaactttaagcttcgcatt
gctgattacattcgttatcgaaagctcacatcaaacatgaatgatcgattcccagatgct
acgcctgaagagcttaatgcaagtgacgcaacttgtatcatttgccgtgaagagatgaca
acagccaagaaactattatgtggacacctttttcatgtgtcttgccttcgatcatggtta
gagcgacagcatacctgccctacttgcagggctctagttgtacctcctgacagtgggaca
ggtacagctggcgggcataggggctcacagtcagatgctcatcaacaggggacaggcaca
atggctcagggtgctggagttgctggtgatagtgtgagccaacatgaagccaggctccga
gctgctgctgctgctgcatcaatatatgagaagtctcatgtatatgcttctgcaaacaga
ctagtatggtctcctggatatgcggcacttcctcaggttcaaagacatacggctgactcc
cctaatactgaatctagtggagaagcgtctagtggacaatcacggcctcagcttgcaacc
cctgctggagctgcaaacttgtccttctctcagtttccaccttacatgtttgttcctggc
gccaatgtggcctatggggggaggctgagcagcgatcaaaatctgacagcttctcagctg
gaggcccagaaaaagtttcttcaggcccagatagggatactgcagaatcagctccaagtt
ttacagaaaccaaaaccaaaggaaagtgtggacatgggtccaacaggggcatctttggat
ggcaaaggaaagagcgttgcagctccttcatctgtttcagattgtggacgtcatgaagat
cgggttgatacgtag
DBGET
integrated database retrieval system
