Malus domestica (apple): 103426600
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Entry
103426600 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52C-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103426600
03041 Spliceosome [BR:
mdm03041
]
103426600
03036 Chromosome and associated proteins [BR:
mdm03036
]
103426600
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103426600
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
103426600
mRNA cycle factors
Common to processing body (P body) and stress granule
103426600
Spliceosome [BR:
mdm03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
103426600
Chromosome and associated proteins [BR:
mdm03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
103426600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
103426600
NCBI-ProteinID:
XP_008362909
LinkDB
All DBs
Position
02:complement(join(2643480..2644022,2644354..2644467,2644599..2644763,2644893..2645135,2645419..2645502,2645614..2646339))
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AA seq
624 aa
AA seq
DB search
MTMPWSDSFTESTRNPTRRTLPKYIPRHLRNSEGGGGSYGYGYAPPTESAQYGFRQSYAG
GPGRQAGRNGPGRGGGGRGRGRGGARFWAQTPPNPTPDPNPFDNVSEEFDQLKVTEDEGD
GNGGINFDAYEDIPVEASGEDIPPPVDTFVEIDLAECLNENIKRCKYVKPTPIQRHAIPI
AMAGRDLMACAQTGSGKTAAFCFPIISGVLNNGVGLSPARGVDRGVCPSALILSPTRELA
GQIHEEAKKFGYQSGVKIVVAYGGAPISQQLRILDRGCDILVATPGRLVDMIERSRVSLS
NIKYLALDEADRMLDMGFEPQIRRIVEQMDMPRSGARQTLLFSATFPDEIQRLAADFLSN
YIFLSVGRVGSSTGLITQRVELVEDMDKRNHLMKLLSQQANGAHGKVALTLVFVETKRSA
DSLENWLRMNRFPAIAIHGDKVQMEREQALRLFKCGKTPILVATDVASRGLDIPHVSHVI
NFDLPKSIDDYVHRIGRTGRAGNSGLATAFFNAKNQPLAKGLIELMQESNQEVPSWLNEY
AEGESQTYSSGGGGGGRNRRSGGSKFGGYDYRRDSQYAHDGYYGPSSYGYGDYSGGMSAA
PYNDAAAVPNGYGNYETIVAGGWD
NT seq
1875 nt
NT seq
+upstream
nt +downstream
nt
atgacaatgccttggtccgattccttcaccgagtcaactcggaacccgactcgccgaact
ctgcccaaatatatacctcggcatctccgaaacagtgaaggcggcggcgggtcgtacggt
tacggctacgcgcccccaaccgagtcggcccagtacggctttcggcaaagctacgctggt
ggtccaggaaggcaagccggccggaacggtccgggtcgcggtggcggaggacgaggtcgc
ggacgtggtggcgctcgcttttgggctcaaacgcccccaaacccgaccccagacccaaac
ccgtttgataatgtctctgaggaatttgatcagctcaaagtcactgaggacgaaggcgat
ggaaatggcggtatcaatttcgacgcctacgaagacatcccggtggaggcgagcggcgag
gacattccgccgccggtggacacgtttgtcgagatcgatttggccgaatgcttgaacgaa
aacatcaagcggtgcaagtacgtgaagcccacgccgattcagcgccacgctattccgata
gccatggctggccgcgacttgatggcctgtgctcagactgggtccggcaaaacggctgcg
ttttgcttccccattatcagtggggtcttgaacaacggtgtggggttgtcgccggctcgc
ggcgtggatcgcggcgtgtgcccctccgccctcattttgtctccgacgagagagctggct
ggtcagattcatgaggaagctaagaaatttggttatcagagtggggtgaagattgttgtt
gcttatggtggagctccaatttctcagcagttacgtattctggatagaggttgtgatatc
cttgttgcaactcccggtcgcttggtggacatgattgagaggtcacgagtttcgctgagt
aatatcaagtatttggcattagatgaggctgataggatgttggacatgggttttgagcct
cagataaggaggattgtcgaacaaatggacatgcctcgctctggtgcaagacaaacgttg
cttttcagtgctacgttccctgatgaaatacagaggctcgctgcagattttctgtcaaac
tacatttttctatctgttggaagagttggatcaagcacaggactcattacacaaagagtt
gaactcgttgaggatatggacaaaagaaaccatttgatgaagctgcttagccagcaggca
aatggagctcatggaaaggttgctttaaccttggtgtttgtggagaccaagagaagtgca
gattctttagaaaactggttacgcatgaatcgttttccagctatagctatacatggtgat
aaagtgcaaatggagagggagcaagctttgagattgttcaagtgtggcaagaccccaata
ttggtggcgacagatgttgcttcacgagggctagacatccctcatgtttcccatgtcatc
aactttgatctgccaaaaagcatagatgactacgttcaccggattggacgaacagggcgt
gctggaaattcaggtcttgcaactgctttcttcaatgccaaaaaccagccactcgccaag
ggactgatcgaactgatgcaggagtcaaaccaggaggttccaagctggctgaacgaatat
gctgagggcgaatcacagacatacagcagtggtggtggtggtggtggccggaacaggagg
tctggtggcagtaagtttggtggatatgactatcgtagggactctcaatatgcgcatgac
ggttattacggtccaagcagctatggctatggagattattctgggggcatgtctgctgct
ccctataacgatgctgctgctgttccaaacggctacggaaactatgaaactattgttgct
ggtgggtgggattag
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