KEGG   Malus domestica (apple): 103426927
Entry
103426927         CDS       T03194                                 
Name
(RefSeq) ATP-dependent DNA helicase Q-like 4A
  KO
K10901  bloom syndrome protein [EC:5.6.2.4]
Organism
mdm  Malus domestica (apple)
Pathway
mdm03440  Homologous recombination
mdm03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    103426927
   03460 Fanconi anemia pathway
    103426927
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mdm03032]
    103426927
   03400 DNA repair and recombination proteins [BR:mdm03400]
    103426927
Enzymes [BR:mdm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     103426927
DNA replication proteins [BR:mdm03032]
 Eukaryotic type
  DNA Replication Termination Factors
   Other termination factors
    103426927
DNA repair and recombination proteins [BR:mdm03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecQ family DNA helicases
     103426927
    Bloom's syndrome complex (BTR)
     103426927
   FA (Fanconi anemia) pathway
     103426927
SSDB
Motif
Pfam: DEAD Helicase_C RQC RecQ_Zn_bind HRDC ResIII
Other DBs
NCBI-GeneID: 103426927
NCBI-ProteinID: XP_028950838
LinkDB
Position
02:complement(join(31876779..31877169,31877243..31877320,31877528..31877622,31877916..31878045,31878935..31878990,31879143..31879304,31879387..31879467,31879592..31879750,31879852..31879980,31880481..31880549,31880669..31880739,31880813..31880936,31881236..31881371,31881471..31881622,31881720..31881840,31882298..31882425,31882511..31882597,31882915..31883046,31883135..31883513,31883769..31883899,31883987..31884157,31884493..31884924,31885082..31885139,31885978..31886148,31886230..31886258))
AA seq 1223 aa
MNRASHMRQDHPNLGQDFFAQTPFKANLLEHVNALNNFSCPHNILSSNFIFSLPTQKPHA
EEAMGSGSMACPIQNTERLQSAQVQKAWHALSNLQISCRNYTKPGKTLLVKDVNAECRRD
VGTTTLPSSCNIDKSRAHMPTHQYINGTNTRNSEAAICSGNPFPSSNVNVADAGKNLGRQ
SQFRATIVNSSDDRALDGSLGNNSVHNSQGKDSAKVFVNDLDDDDDDIIENIDVDQIVEQ
YQSSCTPQPSISKLPPIAPFIDKDNIAGQDATSLPPELCSNCSHGFKIGLCPEAASHLQE
MKDTLIIISNELLDDVNDLSPEQIKKLRQDRLQLNKQIQQLERYLCNNSLDEERRKSHFS
ASTATPRPFQCETPQAAAFRTDPMRFDSQVHPHNESGGYDRCNLSSVSFSSVDRLDFSSC
PVEREPYISKFVEVNYIEGSKDKKWSSDNFPWTKKLEDGNKKVFGNHSFRLNQREVINAT
MSGYDVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMHLLQANVPAAYLSA
NMEWSEQQEILRELNYEYCKYKLLYVTPEKVAKSDALLRQLENLNARQLLSRIVIDEAHC
VSQWGHDFRPDYQALGILKQKFPNTPVLALTATATASVKEDVVQALGLVNCIVFRQSFNR
PNLRYSVVPKTKKCVDDIDKFIKENHYDESGIIYCLSRMDCEKVAERLQECGHKAAFYHG
NMDPAQRAFVQKQWSKDEINVICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG
RDGQHSSCVLYYSYSDYIRVKHMISQGVIEQSPLTSGYNRINTANSGRVLETNTENLLRM
VSYCENDVDCRRLLQLIHFGENFDCATCKKTCDNCLKIKSFSEKDVTEIAKQLVELVKLT
GQQFSSSHILEVYRGSLNQFVKKHRHQTVRLHGAGKHLAKGEASRVLRHLVTEDLLVEEV
KKSDVYGSVSSILKVNELKARELFSGRKTILIRFPSTLKASKQKNPEAISAKGSLTSGMQ
SPPITGTEQPQSKGDLVLYTKIFTALKMLRTNIIREAGDGVMAHHIFPNTTIKNISSRMP
RTKDELLEINGVTQIKVARYGDQILETIEAAVKEYFKTDKNSSGSNDSNDIKRKRDGNKD
RKEIFEDDDFRSTDRSKKRALKTQSNTIETFRYVEPDYSEFIDDELDLSGYDFEANVPDM
KTNQKGGGRVLPQWSTPGNGRHR
NT seq 3672 nt   +upstreamnt  +downstreamnt
atgaatagggcatcgcatatgaggcaagatcatcccaatctgggtcaagatttcttcgcc
cagacgccttttaaagctaatttgttggaacatgtcaatgcacttaataatttctcgtgc
ccgcataacattctgagctcaaatttcattttctccttaccaacacaaaaacctcatgcc
gaagaggcaatgggttccggctcaatggcttgtccaattcagaatactgaaagattacag
agtgcacaagttcaaaaggcttggcatgctctttccaatcttcagatttcttgtaggaac
tacacaaaacctggaaaaactcttctagttaaggatgttaatgcggagtgtcgtcgtgat
gttggaacaacaactttgccaagctcatgcaacattgataagagtcgcgcacatatgcca
acacatcaatacattaatggaactaataccaggaacagtgaagcagcaatttgctcgggc
aatccgtttccgtcaagtaatgttaatgttgcggatgcagggaaaaatcttggacggcaa
agtcagttcagagcaacaatcgtcaacagttctgatgatcgggctttggatggatctctt
ggcaacaatagtgttcataacagccaagggaaagactctgcaaaagtttttgttaatgac
ctggacgacgatgatgatgacataattgagaatattgatgttgaccagatagtggaacag
taccaatcaagttgcacacctcaaccatcaatttccaaacttccacccattgctcccttt
atagataaagataatattgcaggacaagatgctactagtttgccaccggaattgtgttca
aattgcagtcatgggtttaagataggactttgcccagaagctgcaagtcatttgcaggaa
atgaaggataccctaattatcatatcaaatgaactgcttgatgatgtcaatgacctcagt
ccagaacaaataaaaaagcttcgccaagataggttacagctaaataagcagattcagcag
cttgagagatatctttgtaacaactcattggacgaagaaaggcgaaagtcacatttttct
gcatcaacagcaactcccaggcctttccaatgtgaaacacctcaagcagctgcattcagg
actgatcccatgagatttgattcacaggttcatccacataatgagtctggaggatatgac
agatgtaatttatcatcagtttcattctcttctgttgataggcttgatttctcatcttgt
cctgttgagagggaaccatacatttcaaagtttgttgaagttaactacattgaaggttct
aaggacaaaaaatggagtagtgataattttccatggaccaaaaagctggaggatggtaac
aagaaagtgtttggaaatcactctttccggctcaaccaaagagaggtcattaatgctacg
atgagtggctatgatgtttttgttttaatgccaactggagggggtaagagcttgacatat
cagctccctgcgctaatttgtccgggaataacattggttatttctccccttgtgtcactt
attcaagatcaaataatgcatttattacaggcaaatgttcctgctgcttacctaagtgcc
aatatggagtggtctgaacaacaggaaatacttagagaactaaattatgagtattgtaaa
tacaagctgttatatgtcaccccagagaaagttgctaaaagtgatgctcttttacggcag
ttggagaatttaaatgctcgtcaattgctttctaggattgttattgatgaagctcattgt
gtgagtcagtgggggcatgatttcagaccagattatcaggctcttggtatcttgaaacag
aagttcccaaatactccagttttggctttaacagctactgcaaccgctagtgtaaaagaa
gatgttgtgcaagctcttggtcttgttaactgcattgttttccggcaaagttttaatcgc
ccaaatttacggtattctgttgttcccaagactaagaagtgtgtggatgacattgacaag
ttcattaaagaaaatcattatgatgaaagtggaataatttattgtctctcaagaatggac
tgtgaaaaagttgccgaaagattacaggaatgtggccataaagcagcattttaccatggt
aatatggatcctgctcagcgtgcctttgttcagaagcagtggagtaaagatgaaatcaac
gttatatgtgctacagtggcatttggaatgggtatcaacaagccagatgtccgctttgta
atccatcactctctcccgaagtctattgaaggctaccatcaggagtgtggtcgagctggt
agagatggtcagcattcatcttgtgtgttgtattacagttacagtgactatattcgagta
aagcatatgattagtcaaggagttatagagcaaagcccactgacatctggatacaatcgt
atcaatactgctaattctgggagagtactggaaacgaataccgaaaatcttttgcgcatg
gtcagttattgtgaaaatgatgttgattgccgacgacttctacaacttattcattttgga
gaaaactttgattgtgcaacatgcaaaaagacgtgtgataattgtttgaagattaaaagt
ttcagtgagaaggatgtcactgaaatcgcaaagcaactggttgaactggtgaagttaaca
gggcagcagttttcgtcatctcatattctagaagtctacaggggctccttaaaccaattt
gtcaagaaacacaggcatcagactgtgagactgcatggagcaggaaaacatctagccaag
ggtgaagcttctcgtgtattacgtcatcttgttaccgaggaccttcttgttgaggaagtc
aagaaaagtgatgtttatggatctgtatcgtcaatactaaaggttaatgaactgaaagcg
cgtgaacttttctctggcaggaagacaattttaataagattcccttccaccttaaaagct
tccaaacagaaaaaccccgaagcgatttcagctaaaggctcactgacatctgggatgcag
agccctccaattactggcactgagcaacctcaatcaaaaggagatttggttctatacacg
aaaatatttactgctttgaaaatgcttcgaactaatatcattagagaagctggtgatggg
gtcatggcacaccacatatttccgaatacaactattaaaaacataagcagcagaatgcct
agaacaaaggatgaactcctcgagataaatggcgttacccaaattaaggtggccaggtac
ggagatcaaatacttgaaacaattgaagctgccgtaaaggaatacttcaaaacagataaa
aacagcagcggtagcaatgatagcaacgatataaagaggaaaagagatggtaacaaagat
cggaaggaaatttttgaagatgacgacttcagaagcaccgatagatcgaagaaaagggct
ctaaagacgcagagcaatactattgagaccttccgttatgtggagccagattacagtgaa
ttcatagatgatgaattagacttatctggttatgactttgaagctaatgttccggatatg
aaaaccaatcagaagggtggcggaagagtgctgccacagtggtcaactcctggaaatggg
cgacatcggtag

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