Malus domestica (apple): 103427093
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Entry
103427093 CDS
T03194
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7-like
KO
K14409
protein SMG7
Organism
mdm
Malus domestica (apple)
Pathway
mdm03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
103427093
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103427093
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
103427093
mRNA cycle factors
Common to processing body (P body) and stress granule
103427093
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
103427093
NCBI-ProteinID:
XP_070675241
LinkDB
All DBs
Position
03:join(21047799..21047867,21048080..21048667,21048755..21048877,21049183..21049415,21049614..21051621)
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AA seq
1006 aa
AA seq
DB search
MIPQMDNMSAPSSRERAQRLYDKILELENRRRRSAQARIPSDPNAWQQMRENYEAIILED
HAFSEQNNIEYALWQLHYKRIEELRAHFSAAMASTGSNTSQGVKGPIRPDRVTKIRLQFK
TFLSEATGFYHDLIVKIRAKYGLPLGYFSEDSENRTVIDKDGKKGLISCHRCLIYLGDLA
RYKGLYGEGDSKTREYAAASSYYMQAASLWPSSGNPHHQLAILASYSGDELVAVYRYFRS
LAVDCPFSTARDNLIVAFEKNRQSYSQLSGNTNASAVKELPARLAGKGRGKGETIPTSKD
NSTEVSLVKERASSTQETYKAFCIRFVRLNGILFTRTSLETFAEVLTVVSSGLCELLSSG
GEEVLNFGADAVENGLVIVRLISILIFTVHIVKKESEGQTYAEIVQRAVLLQNAFTAVFE
LMGHILERCVQLCDPSSSFLLPGILVFVEWLACCPDVAAGSDADEKQSSVRSKFWNVCIS
FFNSLSSTGPMSIDDDEDETCFNNMSRYEEGETENRLALWEDFELRGFTPLIPAQTILDF
SRKHSFGSDGHKEKGARVKRILAAGKALANVVKVDQEAVYFDSKLKKFVIGFEPQVQNDI
VPTTYLHMANGNDNLQENQVVGTISLGAAYPKPELSMEGDEEDEVIVFKPIVAEKRPDAV
STAWRAYDGLEPGKNASPGDQTVNVTYGSAALDNLHHQNAFRADLQIPVTFANGIPQHLQ
PIQSHGSKFSVDTGFGVGSQLPASITNTVPLNLQPVQSNSLNLAMEEEMSLANSLKSMGF
MGNGHALKSEPVAVPVPYQHPVNGSTSGMFYSHTKAPENPLSYKVDATYGAIADGLTVKT
SSALPTGIRKSPVSRPVRHLGPPPGFSRVPPKNANESICSSDSMSESLVMDDYSWLDGYQ
MPSSTKVNGLNDYVSYSSQYNPHRFTNSNGLSGTVNFPFPGKQGPPMQLPGENQKSWQDI
QRLDDLKLHHEMQLQQQQQLVNGNQHLNPQPEQYQGQSLWTGRHFV
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atgattccacagatggataacatgtctgctccttcatcaagggagcgtgcccaacgcctg
tatgacaagattcttgagttggagaataggcgtcgaaggtctgcccaagcacgaattcca
tcagatcccaatgcctggcaacagatgcgtgagaattatgaagcaataattcttgaggat
catgctttttctgagcagaacaatatcgaatatgctttgtggcagttacattacaagcgt
attgaggaattgcgagcacacttcagtgctgctatggcttctacaggttcaaacacatct
cagggtgtgaaagggccaattaggcctgatcgggttacaaaaataagactgcagtttaaa
acattcctttcagaagcaactggattttatcatgatttaatagtgaagatcagagcaaag
tatgggcttcctctgggttatttctctgaagattctgaaaaccggaccgttatagacaag
gatggaaagaaaggtctaatttcatgccacagatgcttgatatatttgggtgaccttgca
cgctacaaaggactgtatggggaaggggactcaaaaactcgtgagtatgctgcagcctca
agttactatatgcaagctgcatctctctggccatccagtgggaacccccatcatcagctt
gctatattggcttcctattcgggggatgagttggtggctgtttatcgatattttcgtagc
ctggcggtggattgtcccttttcaactgcgagagataacttgattgttgcatttgagaag
aatcgtcagagttactctcaactgtctgggaatactaatgcttctgcagtcaaagagttg
cctgcacggttggcaggcaaaggtagagggaaaggggaaacaatacccacatctaaagat
aacagtactgaagtgagcctggttaaggaaagagcatccagtacccaggagacttataag
gctttttgcatccgttttgtccgtctgaatggcattcttttcactcgtactagcctggag
acatttgcagaagttctaactgtggtaagcagtggcttatgtgagcttctgtcttctgga
ggagaagaggtgctgaattttggtgcagatgctgttgaaaatggacttgttattgttaga
ctcatctccatattgatattcacagttcatattgtgaaaaaggaaagcgaaggtcagaca
tatgcagaaattgtacaacgtgctgtcctgctgcagaatgcatttactgctgtttttgag
ttgatgggacacatcttagagagatgtgtgcagttgtgtgatccttcttcaagtttcctg
ttaccaggtattttggtttttgttgaatggttggcatgctgtcctgatgttgcagctgga
agtgatgcagatgaaaaacagtcgtctgttagatccaaattctggaatgtatgtatatcc
ttcttcaatagtctctcgtctactgggccaatgtcgatagatgatgatgaagatgagact
tgctttaataacatgagcagatacgaagaaggtgaaactgaaaaccgtcttgctctgtgg
gaggattttgagttgagaggatttactccactaattccagcacaaacaatattggacttc
tcgaggaagcattcttttggaagtgatggccataaggaaaaaggggcccgtgttaagagg
attctggcagcaggcaaagctcttgcaaatgtggttaaggttgaccaggaagcagtatat
tttgattcgaagttaaagaaatttgtcatcggttttgagcctcaagtgcaaaatgatatt
gttcctaccacctatctacatatggctaatggaaatgataatctgcaagaaaatcaagta
gtgggcacaatcagtttgggagctgcatatccaaagcctgagttatccatggaaggggat
gaggaagatgaagttatagtctttaaaccaatagtggctgagaagcgacctgatgcagta
agcaccgcatggagagcctatgatggcctagagcctggtaaaaatgcttctccaggtgat
caaacagttaatgtaacctatggttctgccgctttggataatctacaccatcaaaatgcc
tttagggctgatttacaaatacctgtaacttttgcaaatggtataccccaacacttgcaa
ccaatccagtcacatggttccaagttttcagtggatactggttttggtgttggttcacaa
ctacctgcatcaattaccaatacagtacccctgaatttgcaaccagttcaatcaaattcc
ttgaatcttgcaatggaggaagaaatgtctcttgctaatagcttaaagagtatgggattt
atggggaatgggcatgcactaaaatctgagcctgtagcagttcctgttccataccaacac
ccagtgaatggtagtactagtggtatgttttacagccacacaaaagctccagaaaatcct
ttgtcttataaagttgatgcaacttatggagcaatcgctgacgggttgactgtaaagaca
tcatcagctctgcctacaggtatccgaaaaagtccagtaagtcgacctgttaggcacctt
ggtccaccacccggttttagccgtgttcctcccaaaaatgcgaatgaatcaatttgtagt
tcagattcaatgagtgagagtctagtgatggatgattacagctggttggatggatatcag
atgccatcttcaacaaaagtaaatgggctcaatgattatgttagttattcatctcaatac
aatccccatcgcttcacaaacagcaacggcttaagtggaacagtgaacttcccctttcct
ggtaaacagggtccacccatgcaactaccaggggaaaaccagaaaagctggcaagatatc
cagaggcttgatgacctcaagctacaccatgaaatgcagctgcagcaacagcaacaactt
gtaaatggaaatcagcacttgaatccacagcctgagcaatatcaaggacagtctctctgg
acgggccgccattttgtgtga
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