Malus domestica (apple): 103427247
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Entry
103427247 CDS
T03194
Name
(RefSeq) transcription initiation factor TFIID subunit 4b-like isoform X3
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
mdm
Malus domestica (apple)
Pathway
mdm03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
103427247
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mdm03021
]
103427247
03036 Chromosome and associated proteins [BR:
mdm03036
]
103427247
Transcription machinery [BR:
mdm03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
103427247
Coactivators
SAGA/TFTC/STAGA complex
103427247
Chromosome and associated proteins [BR:
mdm03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
103427247
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
Motif
Other DBs
NCBI-GeneID:
103427247
NCBI-ProteinID:
XP_017185572
LinkDB
All DBs
Position
03:join(16390516..16391451,16396290..16396414,16396503..16396584,16396705..16396840,16396953..16397032,16397113..16397169,16397256..16397396,16397754..16398015,16398706..16398887)
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AA seq
666 aa
AA seq
DB search
MLSSSVDATQLKDPHSLEVHPRGANSHTDPSHIPPSTVQVQTDSRHPVENSARKFSERES
LSDSDGMQVSQMPPSCVVASDQERECSSVPTQVFNKPQQQQQQLHYSESSLSMHGNAGGT
FHPYSGTRINTSALPVKQQPFDAQPRQSLQHQSMGSAQSGGQAHGMNIISMSKMGSQNSM
NDPSRLEGGSCSHLNNNATLEQNPGPCKSSNKEQSSDPLSSMAYVKQGSFNQTIRQQHNP
SLPDSQGLPSVSAALLEQGNASSGIPMNEVLEKSSRLGASTSVSIAPSSSKSTLPTISVS
PSLTMQVNPSVSLGPRITSGTSPSGACKKTLPKKRSLGQNKPLETLGSSPSQSSKKQKVS
GTFVDIAELNDVTSVSGVNLEEEEELLFSGPKKHSKASEASRKFVQEEEERLILQKAPLQ
KKIGEIRLTHVSLIVVKCGLKSVRHDVERCLSMCVEERMRRLINTLILLSRQWVDAEKSR
HHTITTSDVRQQIIDLNRKPREERKKKRAEAEKLWKLNETNKKDNDKMRTAAAANVAALA
AVGGDDMFSKWKLMAQARKQRDGEIDAASRSQPVQGVNRTPTSTAGRIMESEEAEKKGVA
APVAAAATSRKAGSNQVTTTQTRMARSISVKDMIVVLEREPQMSKSTLLYRLHERIQSDT
AIASSN
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgctatctagtagtgtagatgccacacagttgaaggatcctcattcacttgaagttcat
ccgagaggtgccaattctcacactgacccatcacacattcccccttcaacagttcaggtg
cagactgattcaaggcatccagttgaaaacagtgctagaaaattttcagagagagaatct
ctctcagattctgatggaatgcaagtcagtcaaatgccaccctcttgtgtggtagcttcg
gatcaagaaagggagtgctcctcagttcctacgcaagtatttaacaagccacagcaacag
caacaacaattgcactattcagagtcatcacttagtatgcatggaaatgctggtggtact
tttcacccgtattcagggacaaggatcaatacttctgcattgcctgtcaaacagcaacct
tttgatgcacaaccaaggcaaagtctacaacatcaaagcatgggttctgctcagtcaggt
gggcaagcacatggaatgaacatcattagtatgtccaaaatggggagtcaaaattctatg
aatgaccctagtagactggaaggtggatcttgttctcacttgaacaataatgctacttta
gaacagaatcccggtccttgtaaatcgtcaaataaagagcagagttccgatcccttgtca
tcaatggcatatgtcaaacagggatcgtttaatcagactattaggcagcaacacaacccc
tcattgcctgattcacagggattgccttctgtttctgctgcactacttgaacagggaaat
gcatcatctggaattccaatgaatgaagtcttagagaagtcttctagattaggcgcttca
acatctgtaagcattgctccttcatcatctaaaagcacattgcccacaatttctgtttct
ccttccctcacgatgcaagtcaatcctagtgtctcgttaggccctcggataacatctgga
acctctccttctggggcttgtaagaaaacccttccaaaaaaacgttctcttggccaaaac
aagccactcgaaacacttggttcatcaccatcgcaatcaagtaagaagcaaaaagtatct
gggacctttgttgatatagcagaactgaatgatgtcacttctgtcagtggagtcaatctc
gaggaagaggaagagctgctattttcagggcccaagaagcatagtaaagcttcagaagcc
tctcgaaaatttgtgcaagaagaagaggaaaggctgattttgcagaaggctccattgcag
aaaaagataggggaaatcagacttacacatgtgtctttgatagtggtcaaatgcggtttg
aaaagtgtacgacacgatgtagagcgatgcttgtcaatgtgtgttgaagaaaggatgagg
aggcttataaatactttgatcctactgtcaaggcagtgggttgatgctgaaaagtcaaga
caccacactattactacctctgatgttcggcaacaaattattgatctcaatcggaagcct
agagaagaacgtaaaaagaagcgggctgaggcagaaaagctctggaagcttaatgaaaca
aacaaaaaggacaatgacaaaatgaggacagcagcagcagcaaatgttgctgcccttgcg
gccgttgggggagatgacatgttctcaaaatggaaacttatggcacaagcacggaaacaa
cgtgatggtgagattgatgcagcatctagatcccagccagttcaaggtgtaaaccgcaca
cctacatctacagctggaagaattatggagagtgaagaagcagagaaaaagggtgttgct
gctcctgttgctgcagctgctacttccagaaaagccggaagtaaccaagttaccacgact
cagacaaggatggctcgtagtatatcagtcaaggatatgattgttgtcttggaaagggaa
cctcagatgtcgaagtccactctgctgtatcggttgcatgagagaatccaatccgacact
gctatcgcttcgtcaaattga
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