Malus domestica (apple): 103427835
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Entry
103427835 CDS
T03194
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1-like
KO
K14485
transport inhibitor response 1
Organism
mdm
Malus domestica (apple)
Pathway
mdm04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
103427835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mdm04121
]
103427835
Ubiquitin system [BR:
mdm04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
103427835
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_4
LRR_6
F-box-like
F-box
Motif
Other DBs
NCBI-GeneID:
103427835
NCBI-ProteinID:
XP_008364135
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All DBs
Position
05:join(44062815..44063266,44063872..44064367,44064630..44065388)
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AA seq
568 aa
AA seq
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MDSQRKKVLEQVLNLVTSPKDRSSVSLVCKDWYDVERHSRRHVFIGNCYSVSPEIVTRRF
PNIRSVTLKGRPRFSDFNLVPPNWGGDVRPWLDVFATEYPQLEELRLKRMTVSDESLEFL
AASFADFKALSLLSCDGFSTDGLEAIATDCKNLTELDIQENDIDDKSGDWLSCFPENFTS
MEILNFSCLNSDVDFDALESLVSRCKSLKVLKVNKTVTLDQLRSLLNHAPQLLELGTGSF
WQELTPSQHSELERVFSNCKNLHALSGLWQATALYLPVLYPVCTNLTFLNLSYAATLQSW
DLAKLVANCPHLRRLWVLDTVEDKGLEAVGSNCPLLEELRVFPSSPDGDDIVDGVTESGF
VAVSNGCPRLRYVLYFCWQMTNAAVATVAQNCPDITHFRLCIMTPAKPDHLTGEPMDEAF
GAVVKTCAKLERLSVSGLLTDLTFEYIGKYAKNLEYLSVAFAGDSDQGMQYVMNGCPKLK
KLEIRDCPFGDTALLSGLEKYESMRSLWMSACLVTMNACRSLASKVRRLNVEVMKDDENG
DDSQADKVYVYRSIAGPRKDAPAFVLTF
NT seq
1707 nt
NT seq
+upstream
nt +downstream
nt
atggattcccaaagaaagaaggttctggagcaggtcctgaacctggtcacttcacccaag
gaccggagctccgtctcgctggtctgcaaggactggtacgacgtggagagacactctcgc
cgccacgtcttcatcggaaactgctactccgtgtcgccggagatcgtgacccggcggttt
cccaacatccggagcgtgaccctgaaggggaggccgcggttctcggacttcaatctggtg
cctccgaattggggcggcgacgttcggccgtggctggatgtgttcgctactgaatacccg
cagctcgaggagctgaggctgaagaggatgacggtgagtgatgagagccttgagttcttg
gctgcttcttttgctgacttcaaagctctgtcgctgctcagctgtgacgggttcagcacc
gatggccttgaagccattgccactgactgcaagaatttgactgagctcgacatacaggaa
aacgacatcgatgataaaagtggagactggttaagctgcttccctgaaaacttcacatca
atggaaatactaaacttttcctgcctgaattccgatgtcgacttcgatgctcttgagagt
cttgtaagtaggtgcaaatcactgaaggtgttaaaggttaataaaactgtaaccttggac
caactacgaagtcttctcaaccatgctcctcaacttctggagctaggcaccggctcgttc
tggcaagagctgacaccctctcagcattcagaactcgaaagagtgtttagcaactgcaag
aatttacatgcactctctggtttatggcaagcaacagctctttatctcccggttctgtat
cctgtctgtacgaatcttactttcttgaatttgagctatgcagcaactttgcaaagttgg
gaccttgctaagcttgttgctaattgtccacatctccggcgcctttgggtgctggacaca
gtggaagacaaagggttggaggctgttggatcaaactgtcctttgcttgaggaactccgt
gttttcccttcttctcccgatggagatgatattgttgatggggtgactgaatctgggttt
gttgctgtgtccaatggctgtccaagactccgctatgtcctctacttttgttggcagatg
actaatgccgctgtagcaactgttgcacaaaactgccctgatataacccacttccgtctc
tgcataatgaccccagcaaaaccagatcacctgacgggtgagcctatggatgaggctttt
ggtgcagtggtgaagacttgcgctaaactcgaaaggctttccgtttcaggtttactgacc
gaccttacatttgaatacattgggaaatatgccaagaatttggaatacctttcagtagcc
ttcgctggagacagtgatcaggggatgcagtacgtgatgaatggttgccccaagctcaag
aaacttgagatacgggactgcccgtttggggacacagctttgctctcaggtttagagaaa
tatgaatctatgaggtcactttggatgtcagcctgccttgtgacaatgaatgcctgtcgg
tcattggcaagtaaggtgcggaggttgaatgttgaggtgatgaaagatgatgaaaatggt
gatgacagtcaggctgataaagtctatgtttaccgttctattgccgggccaagaaaggat
gccccggcttttgttctcaccttctga
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