KEGG   Malus domestica (apple): 103428110
Entry
103428110         CDS       T03194                                 
Name
(RefSeq) pre-mRNA-processing protein 40A isoform X1
  KO
K12821  pre-mRNA-processing factor 40
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103428110
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103428110
Spliceosome [BR:mdm03041]
 Complex A
  U1 snRNP components
   U1 related factors
    103428110
 Complex B
    103428110
SSDB
Motif
Pfam: FF WW WW_TCERG1 FF_RHG35_4th WW_2 SMODS DUF7138
Other DBs
NCBI-GeneID: 103428110
NCBI-ProteinID: XP_028957990
LinkDB
Position
05:complement(join(21611038..21611175,21611266..21611562,21611685..21611784,21612721..21612785,21612937..21613044,21613882..21613974,21614047..21614094,21614414..21614512,21614679..21614795,21614886..21614939,21615011..21615103,21615189..21615269,21615796..21615901,21616007..21616041,21616137..21616223,21616562..21616639,21616723..21616791,21616929..21617024,21617102..21617162,21617269..21617606,21617729..21617786,21617877..21617929,21622016..21622085,21622231..21622307,21622400..21622561,21622649..21622981,21623077..21623142,21623692..21623724))
AA seq 1004 aa
MANNPQFSGLQPLRPPMVGAVDPPRSLPPMSFQFRPVVPTPHSQEFIPVASQNFQHAGRA
PLMNVRLPPPNHQPQFSQPMQHLPPRSGQPGHGMPPSQAIPLPVAQPNRNFASELPLPQP
NSQAPNNIMPNFGGPRAAVPSSYTFATSSYGQIPRSFNDSTQYQSISQSHATSVSSEGQV
TPLQQASERPAVTTSIAPETGVRPPPAGGTAAEWREHTSADGRKFYYNRRTALSTWEKPL
ELMTPMERADASTNWKEFTSPDGRKYYYNKVTKESRWTMPEELKLARELVEKASVKEIQQ
ETIGDHHATVTVSPSVAEADASIGTAQVKSSPVLVAPVVATGDVQTAVPSRTSASPVVDS
PLKENPSEVQTPVAPSASVMGSTEAAVTINDTGAEPMEISAQDFDSSADGVPAQENEEAK
DDATGKKINDIAAEEKSVDREPIPYENKLEAKNAFKALLESTNIGSDWTWDRAMRVIIND
KRYGALKTLGERKQAFNEFLVQRKKQEAEERRIKQKKARDEFKTMLEECSELTSSARWGK
VESIFENDERFKAVERDRDRREMFEDYIEELQKKERAKAQEERKRNVLEYRRFLESCDFI
KANIQWRKVQDRLEADERCSRLEKIDRLEIFQEYLLDLQKEEEEQKRIQKEELRKAERKN
RDEFRKLMEEHLTEGTLTFKTQWRDYCMKVKDLPAYLAVASNASGATPKDLFDDVVEELT
KQYQEDKTRIKDAVKLGKVVLASTWKFEDFKTVLSNDIGSPPISDANLKLVFNELLERVR
EKEEKEAKKLKRLAEDFSHLLSSIKEITPSSKWEDYKPLLEISQEYSGIGDENFCKEIFE
KHVMQLKEQAKEERKRKEEKARKEKEREERDKRRAKPRREKEVEYERENGEHNKKDGADN
EIADAMDIHESKEKKRSGHDDNRRHRKRHHSDEDHGNGNENDRSRKSHRSSSDHKKSRRQ
EPGPESDSESRHRRHKRDHRNGSRRSGDREDLEDGEFGNVGESR
NT seq 3015 nt   +upstreamnt  +downstreamnt
atggccaataaccctcaattttcaggtctacagcctcttcggcctcctatggttggtgct
gttgatcctcctcgaagtctgccacccatgtcttttcaattccgcccagtagttccgaca
ccacattcgcaggagttcattcctgtggcttctcaaaattttcagcatgccggcagggct
ccattgatgaatgttaggctgcctcccccaaatcaccaaccccagttttcacaaccaatg
cagcatctacctccaaggtctggtcagccaggtcatggtatgcctccatcacaggcaatt
ccattgcccgttgctcagcctaacaggaattttgcatctgagttgcctctacctcagcct
aattcacaagctccaaataacatcatgcctaactttggtggcccacgagcagctgtccct
tcatcatatacttttgcaacttcttcttatggtcaaataccaagaagtttcaatgactcc
acccagtatcagtctatatctcaatcgcatgcaaccagtgtttcatccgagggacaagtt
acacctctgcagcaagccagtgaacggcctgctgtaaccacctccattgctccagaaaca
ggtgttcgacctcccccggccggagggactgcagcagagtggagagagcatacatctgct
gatggaagaaaattttattacaacaggaggacagcattatctacttgggagaagcctttg
gaactgatgacaccaatggagagggcagatgcatcaacaaactggaaggagtttaccagt
cctgatggaagaaagtattactacaacaaggtcaccaaagaatcaagatggactatgcct
gaggaacttaagttggctcgagagctagtagaaaaggcgtctgtgaaggaaatacaacag
gaaacgattggtgatcatcatgccacagtcactgtttctccctctgtagctgaagctgat
gcttcaatcggtactgctcaagtaaaatcaagccctgttttggtggcaccagttgttgcc
actggtgatgttcaaactgctgtaccatcgagaacatctgcctcacctgttgtggattct
cccttgaaagaaaatcccagtgaagttcagacacctgttgcaccatctgcctctgttatg
ggaagtactgaagctgctgtcacaatcaacgatactggtgcagaaccaatggaaatatca
gctcaggattttgatagttctgctgatggagttcctgctcaggagaatgaggaagctaag
gatgatgcaacgggaaagaagattaatgatattgccgcagaagaaaaatcagttgatcgg
gaacccataccatatgaaaataaactggaggccaaaaatgcatttaaagcgctccttgag
tctacaaatattggttctgattggacttgggatcgggccatgagagtgataattaatgac
aagagatatggtgctctcaaaacgcttggagagcggaagcaagcttttaatgagttcttg
gtacaaaggaaaaagcaggaggctgaggagaggcgtatcaaacagaaaaaggcacgggat
gaattcaaaacaatgctggaagaatgctcagagttaacatcatctgcaagatggggaaaa
gtagagagcatattcgaaaatgatgaacgtttcaaagctgttgaacgggatagagatcgc
agggagatgtttgaagactatattgaggaactccaaaagaaagaacgagcaaaagcacag
gaggaacgtaagcgcaatgtattggaatacaggagattcttggaatcttgtgatttcatc
aaggcaaacatccagtggagaaaagttcaagatcgtttagaggctgatgaaagatgttca
cgtcttgaaaaaattgatcgtttggaaattttccaggaatatttgctggatctacaaaag
gaagaggaggagcagaagaggatacagaaggaagaattgagaaaggcagaacgtaaaaac
cgtgatgagttccgcaaattaatggaagaacatctcacggaaggcactcttacattcaaa
actcagtggcgtgattactgcatgaaggttaaagacctacctgcatatctggcagttgca
tcaaacgcctccggtgctactccaaaagatttgttcgatgatgttgttgaggaactaacg
aaacaatatcaggaggacaaaactcgaataaaagatgccgtgaaattgggaaaggtcgtg
cttgcatcaacttggaagtttgaagacttcaaaactgttttatcaaatgatattggctct
ccaccgatatcagatgccaacttaaagctagttttcaatgagttactggaacgagtgagg
gaaaaggaggagaaagaagctaaaaagcttaaacgtcttgcagaggacttctctcatctt
ttatcttctatcaaggagataactccatcttctaagtgggaggactacaaaccacttctt
gaaattagtcaagagtacagtggcattggcgacgagaacttctgcaaggagatatttgaa
aagcatgtaatgcaactgaaagaacaagcaaaagaggagagaaaaagaaaggaggaaaag
gcaaggaaggaaaaggagagagaagaaagagacaaaagaagggcgaagccaagaagggaa
aaagaggtggaatatgaacgagaaaacggggaacacaacaagaaagatggagcagacaat
gaaatagctgatgcaatggatattcatgagtccaaagagaaaaagaggtcaggacatgac
gataataggagacataggaagcggcatcatagtgatgaagatcatgggaatggaaatgag
aatgatcggtctagaaaatctcacagatctagcagtgaccacaagaaatcaagacggcag
gaacctggtcctgaatcagattccgaaagcagacatagaagacataaaagagatcaccgg
aatggttctcgtagaagtggtgatcgtgaggatctagaagatggggaatttggcaatgtt
ggggaaagtcggtag

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