Malus domestica (apple): 103428175
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Entry
103428175 CDS
T03194
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm04120
Ubiquitin mediated proteolysis
mdm04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
103428175
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
103428175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mdm04121
]
103428175
Enzymes [BR:
mdm01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
103428175
Ubiquitin system [BR:
mdm04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
103428175
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
103428175
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
zf-C3HC4_2
EIF3I
Beta-prop_DCAF4
zf-C3HC4
WD40_MABP1-WDR62_2nd
Beta-prop_WDR19_1st
Beta-prop_WDR90_POC16_2nd
zf-C3HC4_3
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_HPS5
zf-RING_2
WD40_MABP1-WDR62_1st
WD40_RFWD3
WD40_like
Beta-prop_WDR75_1st
Beta-prop_CAF1B_HIR1
zf-RING_UBOX
zf-RING_5
zf-C3HC4_4
U-box
Beta-prop_SCAP
Beta-prop_DCAF12
Prok-RING_4
Beta-prop_IFT140_1st
DUF1664
RING_XB3-XBAT31
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
103428175
NCBI-ProteinID:
XP_028960313
LinkDB
All DBs
Position
06:join(4920368..4920682,4920765..4920842,4920923..4921078,4921163..4921456,4921956..4922113,4922229..4922294,4922421..4922499,4923672..4923827,4923928..4924026,4924645..4924749,4925070..4925249,4925436..4925546,4925627..4925797)
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AA seq
655 aa
AA seq
DB search
MDECSTGALVPAVKPEPKESSVGDLADPGSGNMGCPVHEKGLAEVDRDLLCPICMQVVKD
AFLTACGHSFCYMCIKTHLSNKSDCPCCAQFLSTNQLFPNFLLDKLLKKTSARQISKNAS
PVEHFHQALHQGCEVSIKELDTLLALLAEKKRKMEQEEAERNMQILLDFLNCLRKQKVDE
LNEVQTHLQFIKEDIGAVERRRMELYRARDKYSVKLRMLGADDSIYGARKQWHSSTDNNT
GALSGRGGMSIWNLPRKDASDSQYMTQTGLAIARKKRVHAQFGELQECYLQKRHQMVNQP
YSQQEQDKGVIQREGYTAGLADFQTVLTTLTRYSRMRVIAELRHGDLFHSANIVSSIEFD
CDYELFATAGVSRCIKVFDFSSVLNDPADVHCPVVEMPTRSKLSCLSWNKFTKNHIASTD
YEGIVTVWDVNTRQSIMEYEEHEKRAWSVDFSCTEPTRLVSGSDDCKLKLWCTRQEASVI
DIDMKANICSVKYNPGSGNCIAVGSADHHIHYYDLRNPSEPLHVFTGHGKAVSYVKFLSN
YELASASTDSTLRLWNVRDNIPVRTFKGHTNEKNFVGLTVNREYIACGSETNEVFVYHKE
ISKPVTRHKFGSPDLDDADDDAGSYFISAVCWKSDSPTMLTANSQGTIKVLVLAA
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
atggatgagtgctcgactggggctctagtcccagcagtgaaaccagaaccaaaggagtca
agcgtcggggatttggcagatccaggcagcggtaacatgggttgtccggtgcatgagaaa
ggactggcggaggtcgacagggacttgttatgcccaatttgtatgcaggtggtaaaggac
gccttcctcacagcatgtggtcatagcttctgctacatgtgcatcaagacccacctcagc
aacaagagcgactgcccttgctgcgcccagttcctcagcaccaaccaattgttccctaat
tttttgctggacaagcttctgaagaagacctcagctcgtcaaatttccaaaaatgcatcc
cctgtagagcattttcaccaggcattgcaccagggatgtgaagtgtcaatcaaggagcta
gacaccctgttggcactcctggcagagaagaagaggaaaatggaacaagaagaggcggag
agaaacatgcaaatactgcttgacttcttgaattgcctaaggaagcaaaaagttgacgag
cttaatgaggtgcaaacccatctccaatttataaaagaggacataggtgcagtagagaga
cgtagaatggagttataccgtgccagggacaaatactctgtcaagctgcggatgcttgga
gcggatgattctatttatggggcaagaaagcaatggcattcctctacagataacaatacc
ggtgcacttagtggacgaggcgggatgtcaatttggaatcttccaagaaaggatgcatca
gactcccagtatatgactcaaactggtcttgccatagccagaaaaaagcgggtccatgca
cagtttggtgaactccaagagtgttacctgcaaaagcggcatcagatggtgaaccaacca
tattcccagcaagaacaggacaaaggtgtaatacaaagagaaggttatactgcaggtctt
gctgattttcaaacagtgctcactacgttaacacgttacagtcgaatgagggtcattgct
gaacttaggcatggggatctatttcactcagccaatatagtatccagcattgaatttgac
tgtgattatgagttatttgctactgccggagtatcacggtgcataaaagtttttgacttc
tcttcggttttgaatgatccagctgacgtgcactgtcctgttgtggagatgcctacacgt
tcaaagcttagttgcttgagctggaacaagtttactaaaaaccatatagccagtactgat
tatgagggaatagtaacagtttgggatgtaaatactcggcagagtatcatggaatatgaa
gagcatgaaaaacgtgcttggagtgttgatttttcatgcacagagcccacaaggcttgta
tctggtagtgatgattgtaagttaaaactttggtgcacaaggcaggaagctagcgttatt
gatattgacatgaaagccaacatatgttccgtcaagtataatccaggatctggaaactgc
attgcggttggttcagcagaccatcacatccactattatgatttaagaaatccgagcgaa
ccactccatgtgttcactgggcatgggaaagctgtttcttatgtaaagttcttgtcaaac
tatgagcttgcctctgcatccactgatagcacattgcggttatggaatgtgagggataat
attccagttcgtactttcaaaggtcacacaaatgagaagaactttgtaggtcttacagta
aacagggaatacattgcatgtggcagcgaaacaaatgaagtgttcgtgtatcataaggaa
atctctaaaccggtgactaggcataagtttgggtcgcctgatttggatgacgctgatgat
gatgcggggtcgtacttcatcagtgctgtatgttggaagagtgatagccctaccatgtta
actgctaacagtcaaggaaccattaaagtgttggttcttgcggcatag
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