KEGG   Malus domestica (apple): 103429221
Entry
103429221         CDS       T03194                                 
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
  KO
K12821  pre-mRNA-processing factor 40
Organism
mdm  Malus domestica (apple)
Pathway
mdm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mdm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    103429221
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mdm03041]
    103429221
Spliceosome [BR:mdm03041]
 Complex A
  U1 snRNP components
   U1 related factors
    103429221
 Complex B
    103429221
SSDB
Motif
Pfam: FF WW WW_TCERG1 FF_RHG35_4th
Other DBs
NCBI-GeneID: 103429221
NCBI-ProteinID: XP_028962652
LinkDB
Position
08:join(6083115..6083147,6083459..6083521,6083620..6083931,6084025..6084216,6084591..6084664,6084886..6084955,6086502..6086554,6086678..6086735,6086814..6087181,6087287..6087362,6087528..6087626,6087731..6087799,6087879..6087956,6088144..6088230,6088339..6088373,6088488..6088593,6089438..6089518,6089634..6089726,6089795..6089848,6089917..6090033,6090158..6090256,6090995..6091042,6091125..6091217,6091924..6092031,6092114..6092178,6092279..6092372,6092640..6092942,6093038..6093169)
AA seq 1019 aa
MANNPQSSAGQPFRPPPVASMGPQSFGSSPLQYRPVVPTQQGQQFIPPASQQFQPVGQGI
PSPNVGMPGSQSQQLQYSQPMQPYPLRPSQPGHAHSSQALPMQYMQTRPTVPSQSQQPVP
PFNNQMPGMPYSSSYMFAPPTYVQQQNNVSSQFQPMSQVQAHVVSATGQPWVSSGNQGAA
VPSPVQQPGQQSSSTLSTDSAVNVPSQIQQSSSDWQEHMAADGRRYYFNRRTRESNWEKP
LELMTPMERADASTVWKEYTSADGKKYYYNKVTRESKWTIPEELKLAREQAQRELIQGTH
SEMNLTSHTPPAVASAETPMGTSSVGPSTSSALPGMVPSPVAVTPVSSFSNPSPTAPTGS
SVASGAESSITGAVGVQPPAVTVTPVPASVSGSTGVPPTSVNTTTNSVSTYETVASQDIA
SSAADGTLTQDIEEAKRGMAVAGKVNVTPSEEKTFDDEPLVYANKQEAKTAFKSLLESAN
VQSDWTWEQTMREIITDKRYGALKTLGERKQAFNEYLGQRKKLENEERRMRQKKAREEFT
KMLEESRELTSATRWSKAVSMFENDERFKAVERARDREDLYESYIVELERKEKQKAAEEH
KQNIVEYRKFLESCDFIKVNSQWRKVQDRLEDDERCLRLEKLARLLIFQDYIRDLEKVEE
EQKKLQKEQLRREERKNRDEFRKLLEEHVADGTLTAKTLWRDYCTKVKDLPPYEAVALNT
SGSTPKELFDDVFEELEKQYHDDKARIKDAVKSGKVTMTSTLAFEEFKVPILEDIGSPPI
SDINFKLVYEELLERAKEKEEKEAKKRQRLVDDFNNLLHTIKEISAASNWEDSKHLFEET
QEYRSIGDGREVFEEYITNLQERAKEKERKREEEKAKKEKEREEKEKRKDKERKEKERER
EKEKGKDRSKKDETDSENVDITESHGHKEDKKREKDKDRKHRKRHQSSIDDVGSDKEEKE
ESKKHRHSSDRKRSRKHTPESDSESRHRRHKREHRDGSRRSGEHVDLEDGELGEDGEIK
NT seq 3060 nt   +upstreamnt  +downstreamnt
atggcgaataaccctcagtcctcagctgggcagccatttcgtcctcccccagttgcttcc
atgggtcctcaaagttttggttcatccccacttcaataccgaccagtggttccaacacag
caaggacagcaatttattccaccagcttcccaacaatttcagcctgtgggacaaggtatt
ccttctccaaatgttgggatgcctggtagtcaaagtcagcaattacaatattctcaacca
atgcaaccgtatcctctcaggccaagtcagcctggtcatgctcattcgtcacaggcgttg
cctatgcaatacatgcagacaaggcctactgtcccatctcagtctcagcaacctgtccca
ccttttaataatcagatgcctggaatgccttattcttcctcatatatgtttgctccgcct
acgtatgtccagcaacaaaataatgtcagttcacaatttcagccgatgtctcaagtgcaa
gcacacgttgtatctgccacaggacagccttgggtgtcctctggtaatcagggtgcagca
gttccttcaccagtacagcagcctggccaacaatcttcaagcactctttccacagattct
gctgtaaatgttcctagccaaatacagcagtcttcttcggattggcaagagcatatggcg
gctgatggaagaagatattatttcaacagaagaacaagagaatctaattgggagaagcct
ttagagttgatgacaccgatggagagggccgatgcatcaactgtttggaaagagtatacg
tctgcagatgggaaaaagtattattacaacaaggttacaagggagtctaagtggacaatt
ccagaggagttaaagttggctcgtgaacaggctcaaagagaactaatccaaggaacacat
tcagaaatgaatttgacttctcatacccctcctgctgttgcttcagctgaaacacctatg
ggaactagttcagttggccccagcacttcttcagccctacccgggatggtcccgagccct
gttgcagttacacctgtgtcttctttttctaatccttctcctactgcacctactggatca
tcagttgcttctggtgcagagtcttccataacaggtgctgttggcgttcaacctcctgca
gtaactgtgactccagtgcctgcttctgtttcaggaagtaccggagttcctcctacttcg
gtcaacaccactacaaattcagtgagtacttatgaaactgtagcatctcaagatattgca
agttcagctgctgatggaactttgactcaagatatcgaggaagccaaaagaggtatggca
gttgctggaaaagtcaatgtgactccttcagaggagaaaacatttgatgacgaaccactg
gtgtatgccaataagcaggaggcaaaaactgctttcaaatcacttctggaatctgcaaat
gtccaatctgattggacttgggagcagacaatgagggagatcattactgacaaaagatac
ggcgctttaaaaactctaggtgagaggaagcaagcatttaatgagtacttgggtcaaagg
aaaaaactggagaatgaagagaggcgcatgaggcagaaaaaagctcgggaagaattcaca
aaaatgttggaagagtccagggaacttacatcagcaaccagatggagcaaagctgtgagt
atgtttgaaaatgatgaacgattcaaggctgtagaacgagctagagaccgggaagatctt
tatgagagctacattgtagaactcgaaaggaaggaaaaacaaaaggcagctgaagagcat
aagcagaatattgtagagtacaggaaatttctggaatcttgtgactttatcaaggtgaac
agccagtggcggaaagttcaagatcgcttggaggatgatgagagatgcttgcgccttgaa
aagcttgctaggttgctcattttccaggactatattcgtgaccttgagaaggtggaagag
gagcaaaaaaagttacagaaggaacaattgaggcgggaagagaggaaaaaccgtgatgag
ttccgcaagctgttggaagaacatgttgctgatggcactcttacagctaaaactctctgg
cgcgattactgtacgaaggttaaagacttgcctccatatgaagctgttgcattgaacacc
tctggttcaacaccaaaagaattgtttgatgatgtttttgaagaattagagaaacagtat
catgacgataaagctcggataaaggatgcagtgaagtcaggaaaggttaccatgacttcc
acattggcatttgaagagtttaaggttcctattctggaagatattggttctccaccaata
tcagacattaacttcaagcttgtgtatgaggaattattagagagagccaaggagaaggag
gagaaagaggcaaagaagcgtcaacgacttgttgatgacttcaataacctattgcacaca
atcaaggaaataagtgctgcttctaattgggaagatagcaaacacctttttgaagaaacc
caagaatacagatcaattggtgatggtagggaagtttttgaggaatatattacaaactta
caggagagggctaaagagaaggaacgaaagcgtgaggaggaaaaggccaaaaaagagaaa
gaaagagaagagaaagagaagcggaaggataaagagagaaaggagaaggaaagagaacgt
gaaaaagaaaagggaaaggaccgatctaagaaggatgaaacagatagtgaaaatgtagac
ataactgagagtcatgggcataaagaagataagaagagggagaaagacaaagacagaaag
caccggaagcggcatcaaagttccattgatgatgtaggttccgataaggaggagaaagag
gagtctaagaaacacagacacagtagtgaccgcaaaagatcaaggaaacatacacctgaa
tctgacagtgaaagtcggcatagaaggcataagagagagcatcgggatggttcccgtcga
agtggtgaacatgtcgaccttgaagacggggagcttggtgaagatggggaaattaagtaa

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