Malus domestica (apple): 103429292
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Entry
103429292 CDS
T03194
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 30
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
mdm
Malus domestica (apple)
Pathway
mdm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
103429292
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mdm03041
]
103429292
03009 Ribosome biogenesis [BR:
mdm03009
]
103429292
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
103429292
Spliceosome [BR:
mdm03041
]
Complex A
U1 snRNP components
U1 related factors
103429292
Complex B
103429292
Ribosome biogenesis [BR:
mdm03009
]
Eukaryotic type
Pre-60S particles
Helicases
103429292
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
103429292
NCBI-ProteinID:
XP_028948168
LinkDB
All DBs
Position
14:join(25810075..25810130,25810274..25810890,25810985..25811164,25811260..25811421,25811504..25811658,25812045..25812137,25812247..25812332,25812425..25812651,25813373..25813603,25813689..25813795)
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AA seq
637 aa
AA seq
DB search
MYAYDNRHADVNSYRERRSDLMGPAPAAGGTAYGRGGGPAPYGGPSPPVAPYSARVGGPA
QGPGDFNGYPPFQPPSERFNIGRGGGNGSFGGRASNGHVGGGRGRGGSVGRFGGGGRGFD
GGRGGGRSFGGSRGGGAGFGGGRGVGGRGGRHGGSSRGDLDNIMLPKQDFGTLVPFEKNF
YAESPSVRAMSEHDVMVYRTRREITVEGHDIPKPIQMFEDANFPDYCLEAIAKLGFVEPT
PIQAQGWPMALKGRDLIGIAETGSGKTLSYLLPALVHISAQPRLAQGEGPIALVLAPTRE
LAVQIQEEALKFGLRSNIRSTCIYGGAPKGPQIRDLKRGVEIVIATPGRLIDMLEAQHTN
LRRVTYLVLDEADRMLDMGFEPQIRKIVSQTRPDRQTLYWSATWPREVESLARQFLRNPY
KVIIGSASLKANQSINQVVEVVTEVEKYNRLIKLLKEAMVGSRILIFVETKKGCDYVTKQ
LRMDGWPALSIHGDKNQTERDWVLAEFKSGRNPIMTATDVAARGLDVKDIKCVINYDFPS
SLEDYVHRIGRTGRAGATGTALTFFTHANAKFARDLIKILQDAGQVVSPALATMARSSGS
FGGSGGNFRNRGRGGGFGNRGMISGSNTVPIGYKRPW
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtacgcctacgacaaccgacacgccgacgtcaactcctaccgtgagcgccgaagtgac
ctaatgggtccagcgcctgcggctggtggcaccgcttatggccgtggaggtgggcccgct
ccgtatgggggcccatcgcctccggttgctccgtattcggcaagggtgggtggaccggca
cagggtccaggagactttaatgggtacccgccgttccagcccccttccgagcggttcaat
atcggtcgaggtggtggtaatgggagctttggtggaagagcgtcgaatggacatgttggt
ggtggaaggggtcgtggtggtagtgttgggagatttggtggcggtggcaggggttttgat
ggaggccgtggtggcggtaggagcttcggtggtagtcgtggtggaggtgcgggtttcggc
ggtgggcgtggagttggtggaagaggaggtaggcatggtggctcgtcaagaggagacttg
gataatattatgcttcccaagcaagattttgggaccttggtaccttttgaaaagaatttc
tatgctgaaagtccttcagtgagggcaatgtcagagcatgatgttatggtgtatcgtact
aggcgggagattactgttgaagggcatgacatcccaaagccgattcagatgtttgaggat
gcgaatttccctgattactgcctcgaggcgattgcaaaattgggttttgttgaaccaaca
ccaattcaggctcaaggatggccaatggcattaaagggtagagatttaattggcatcgct
gagactggttctggtaagactttgtcgtatctgctgcctgctttggtacacattagtgcg
cagcctcggttagctcagggagaaggtcctattgcattagtattagcacctactcgagaa
ttggcagttcaaattcaagaagaagctttaaaatttggcttacgttccaatattaggagt
acttgcatttatggcggtgctccaaaaggaccccaaatacgcgaccttaaaagaggggtt
gagattgttatagctacgcctggccgactgatagatatgttggaagctcagcatacaaat
ttgcgaagagtcacttatctagttttagatgaggctgataggatgttggacatgggattt
gagccacagataaggaaaattgtttcccaaacccgaccagatcggcagacattgtattgg
agtgccacgtggccaagggaggttgaaagtttagcaaggcagtttttacgtaacccatat
aaggtaatcattggatcagcaagccttaaagcaaaccaatccataaaccaagttgttgaa
gttgtgacggaggtggagaaatacaataggctgatcaaattgctcaaagaagcaatggtt
gggagcagaattctgatatttgtggagacgaaaaagggatgtgactacgttactaaacaa
ttgaggatggatggatggccagctctatccatccatggtgataaaaaccagactgaaagg
gactgggtcttggctgagtttaaaagtggcaggaacccaataatgactgccaccgatgtg
gctgcgcggggtcttgatgtgaaggacataaaatgtgtgatcaattatgattttccatca
agccttgaggattatgtccacaggattggaagaactggacgtgcaggagcaacaggaact
gctttaacctttttcacgcacgcaaacgcaaaattcgctagggatctaatcaagatcctt
caagatgcaggtcaggttgtgagccccgcattggctacaatggcccgatcaagtggtagt
ttcggaggatccggagggaacttccgcaatagaggacgaggaggaggatttgggaaccgg
ggcatgatttctggttcaaataccgttcctatcggttacaagagaccttggtag
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