Malus domestica (apple): 103429577
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Entry
103429577 CDS
T03194
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
mdm
Malus domestica (apple)
Brite
KEGG Orthology (KO) [BR:
mdm00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mdm03019
]
103429577
03036 Chromosome and associated proteins [BR:
mdm03036
]
103429577
Enzymes [BR:
mdm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
103429577
Messenger RNA biogenesis [BR:
mdm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
103429577
Chromosome and associated proteins [BR:
mdm03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
103429577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MOV-10_beta-barrel
AAA_11
Motif
Other DBs
NCBI-GeneID:
103429577
NCBI-ProteinID:
XP_008365948
LinkDB
All DBs
Position
13:join(23900181..23900864,23901160..23901351,23901449..23902402)
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AA seq
609 aa
AA seq
DB search
MSIFSDFWRWIFGGKDEHDSNSASHVQHRTQTRSYEQSQPPFPPSKPVSSPCNPSSSSLK
PPFPPSKPLSSPCNPSSSSLKPPFPPSKPLSSPCNPSSSSPKPSTSLFKPPESSSLNASS
PFSPNPPPVCASKPSPSSPTGPAVSSTKLHPTLKPVLSRASSNVLDQKGKKSYVWVENDS
LPLFAIPDDIQDLIKNGIAPKVLNQPLSPATYKDYFAALLYAEELYYEKWPHFELENVPV
ELQEAAIFKKPDKEEKTLVAFDMASFPSNRPFLLSRDLVYVRPSGTKAEPFQGFIYRVVK
SSVVLVEFEDNFYVNHHSAQKYDVSFSFNRVCLKRAHQAVQNASEALFRNFLFPESVSRA
SIPTAPRLLCTGHKLDPNQLSAVCRILSIRGSPPYLLAGQLCVERSDFGLSRTGLVVSEA
VHQLCQTSHGNRMLICAPSNRCCDGLMRSLLKWIPESDMFRANAAFREKDEVPEDILPSC
LYKEPYFSCPPTEELCKFRVIFSTYMSSFRLHDKGLTAGHFSHIFLVDASSAIEPETMVA
LTSFADKNTTVIVTGERGNRSSWIRADIGRNKGLKISFFERLSKSVPYNIEDSVQCSPHN
WSIIKDSRV
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatttttagtgacttctggagatggatttttggcggtaaagatgagcatgattct
aattctgcttctcacgttcaacatcgcacacaaacccgttcctatgagcaatctcaaccc
ccatttcctccatctaaaccagtctcatctccctgtaatccatcttcatcgtccctcaaa
cccccatttcctccatctaaaccactctcatctccctgtaatccatcttcatcgtccctc
aaacccccatttcctccatctaaaccactctcatctccctgtaatccatcttcatcgtcc
ccaaaaccttccacgtcattgtttaaaccaccggaatcttcttctctcaatgcatcgtct
ccattttctcctaatccccctccggtatgtgcttcaaaaccatctccatcttcccctact
gggcctgccgtatcttccactaagctccatccaacgttgaagccggttctatcccgcgcc
tcttcaaatgtattggatcaaaaggggaagaaaagctatgtgtgggttgagaatgattca
ttacctctatttgcaattcctgacgatatccaagatttgatcaagaatggcatcgcaccc
aaagttctaaaccagcctctgtctcccgcgacatataaggattacttcgctgctctctta
tatgctgaagaattatactacgagaaatggcctcacttcgaattggagaatgtccctgtg
gagttgcaggaagcagcaatttttaaaaaaccagacaaggaagagaaaaccttggtagca
tttgatatggcttcttttccttcgaatcgcccatttcttttgtcgagggacttggtctat
gtgcgaccatcggggacaaaagctgagccatttcagggctttatatatcgcgtcgtcaaa
agcagcgttgttttagtggaatttgaagataacttttatgtcaatcaccattcggcccaa
aaatatgatgtcagcttctcattcaatagggtctgtttgaaaagagctcaccaagctgta
caaaatgcatcagaggctttgtttaggaacttcctcttccccgagtctgtttcgcgtgcg
agtattcccactgcaccgcggctgctgtgcaccggtcataaacttgatcccaatcaatta
tctgcagtttgtcgtattttaagcattcgtggctcaccaccttacctattggctggccag
ctctgtgttgaaaggagcgattttgggctatcgagaactggactggtggttagtgaagca
gtgcaccagttatgtcaaacttcacacggaaataggatgctcatatgtgctcctagtaac
cgctgttgtgatgggcttatgagaagcttgttgaaatggattcctgagtcggacatgttt
cgagcgaatgctgcattccgcgagaaagatgaggtacccgaagacatcctcccgtcatgc
ctttacaaagagccctacttctcttgtcctccgacggaggaactttgtaaattcagagtg
atcttctccacttacatgagtagctttcggctacatgataagggcctaactgctggacat
tttagtcatatttttctggtggatgcttcctctgctattgagccagaaacaatggtggcc
ctgactagtttcgctgacaagaatactactgttatagttaccggtgaacgaggaaaccgt
tcgtcttggattcgagctgacattggaaggaataaggggctgaagatttcattctttgaa
agactttccaagtcagtgccatataatatagaagactcagtccaatgttcaccacacaat
tggagcattatcaaggattcaagagtctga
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